PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00215-augustus-gene-0.33-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 722aa    MW: 79072.2 Da    PI: 6.7378
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00215-augustus-gene-0.33-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.8e-2189144156
                                                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                                       Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                                    ++k +++t++q++eLe +F+++++p++++r eL++klgL+ +qVk+WFqNrR+++k
  maker-scaffold00215-augustus-gene-0.33-mRNA-1  89 KKKYHRHTPNQIQELEGFFKECPHPDEKQRLELSRKLGLEIKQVKFWFQNRRTQMK 144
                                                    79999************************************************999 PP
2START136.72.5e-4330745271205
                                                    CT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-E CS
                                          START  71 qWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdw 123
                                                    +W+et++    +a+t++ is+g      galq+m aelq+lsp v+ R   f+Ry++q+ +g+w
  maker-scaffold00215-augustus-gene-0.33-mRNA-1 307 RWKETFPciiaRASTIDLISNGmagtknGALQVMHAELQVLSPFVSvRQLKFLRYCKQQAEGVW 370
                                                    7*************************************************************** PP

                                                    EEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
                                          START 124 vivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                                                    ++vdvS+d   + ++ +++v +++lpSg+++++++ng+skvtw+eh +++++ +h+l++++++ 
  maker-scaffold00215-augustus-gene-0.33-mRNA-1 371 AVVDVSLDISLESTNMHPFVNCRRLPSGCVVQDMPNGYSKVTWIEHSEYNESGIHELYQPFIRA 434
                                                    *********999999************************************************* PP

                                                    HHHHHHHHHHHHTXXXXX CS
                                          START 188 glaegaktwvatlqrqce 205
                                                    g+ +ga++wvatlqrq e
  maker-scaffold00215-augustus-gene-0.33-mRNA-1 435 GMGFGAQRWVATLQRQSE 452
                                                    ***************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-2273140IPR009057Homeodomain-like
SuperFamilySSF466893.01E-2074146IPR009057Homeodomain-like
PROSITE profilePS5007117.39486146IPR001356Homeobox domain
SMARTSM003893.5E-1988150IPR001356Homeobox domain
PfamPF000461.1E-1889144IPR001356Homeobox domain
CDDcd000861.20E-1989146No hitNo description
PROSITE patternPS000270121144IPR017970Homeobox, conserved site
SMARTSM002345.9E-18239453IPR002913START domain
SuperFamilySSF559619.48E-22298452No hitNo description
CDDcd088753.54E-76301452No hitNo description
PfamPF018521.6E-37307451IPR002913START domain
PROSITE profilePS5084828.965307456IPR002913START domain
Gene3DG3DSA:3.30.530.202.5E-4334423IPR023393START-like domain
SuperFamilySSF559615.22E-20481716No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MTSGAFAPLP LLSTPPIPSS MHSSSTLTLS TSRKMEGQGG EMALIGENYD PGMVGRLRED  60
GYESRSGSDN VEGSGDDQEA GNDQGPAKKK KYHRHTPNQI QELEGFFKEC PHPDEKQRLE  120
LSRKLGLEIK QVKFWFQNRR TQMKTQLERH ENIILRQEND KLRAENALMR DAMANPVCNS  180
CGGPAIPGQI SFEEHQLRIE NARLKDELNR ICALANKFLG RPLSSLATSV PLPSSTSGLE  240
LGVGRNGIGG LSSMGTPLPM GLDLGDGIMG ASAMPLIKPP MSFMGNEIPM DSTITVAYSY  300
SFLFIGRWKE TFPCIIARAS TIDLISNGMA GTKNGALQVM HAELQVLSPF VSVRQLKFLR  360
YCKQQAEGVW AVVDVSLDIS LESTNMHPFV NCRRLPSGCV VQDMPNGYSK VTWIEHSEYN  420
ESGIHELYQP FIRAGMGFGA QRWVATLQRQ SEFLAILMSS TFPLEDHTTL GPAGKRSMLK  480
LAQRMTDKFC SGVCASTTHK WDNLRLGNVS ENVRVMTRRN LDDPGEPHGI VVSAATSVWM  540
PVSQQGLFDF LRDERSRSQW DILCVGRPIQ EMIHIAKGQK QGNCVSLLRG NPTNENESNM  600
LILQETWTDA SGSVVVYAPV DAPSINVVMG GGDSTYVALL PSGFSILPDD RSFFGVPQNC  660
NGTVIKEDNN GSDGSGGCLL TVGFQILINS QPAAKLTVES VETVNNLISC TIQKIKAALK  720
IP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1602491e-68KJ160249.1 Quercus rubra microsatellite qru_CA3F17 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885611.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A2N9HWB20.0A0A2N9HWB2_FAGSY; Uncharacterized protein
STRINGXP_008234278.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]