PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00186-snap-gene-0.41-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family SBP
Protein Properties Length: 372aa    MW: 39809.3 Da    PI: 9.577
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00186-snap-gene-0.41-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP139.59.3e-4475150176
                                                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT- CS
                                        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLak 68 
                                                +CqvegC+adls+ak y++rhkvC +hsk+p+v+v+g+eqrfCqqCsrfh+l efD++krsCrrrLa+
  maker-scaffold00186-snap-gene-0.41-mRNA-1  75 RCQVEGCKADLSDAKAYYSRHKVCGMHSKSPKVIVAGIEQRFCQQCSRFHQLPEFDQGKRSCRRRLAG 142
                                                6******************************************************************* PP

                                                ------S- CS
                                        SBP  69 hnerrrkk 76 
                                                hnerrrk+
  maker-scaffold00186-snap-gene-0.41-mRNA-1 143 HNERRRKP 150
                                                ******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.5E-3670137IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.5373150IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.01E-4174154IPR004333Transcription factor, SBP-box
PfamPF031107.0E-3376149IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGSGSLADSS GGSSSSSPPN SSSDSLNGLK FGRKIYFEDA PPGPVAPAKP GDGPESTPPK  60
KVRGGGGAVG AQPPRCQVEG CKADLSDAKA YYSRHKVCGM HSKSPKVIVA GIEQRFCQQC  120
SRFHQLPEFD QGKRSCRRRL AGHNERRRKP PPGSLLSSRF GRLSSSIFET SSRGFLMDFT  180
AYPRHSGRDA WPTARSEQMP ANPSATSMGK FLPHPWQNTT ENPPSNLYLQ GSASGTSYPG  240
PGIPPGAFTG VTDSNCALSL LSNQTWGSRN RASGLGVKDL MNTEGASMSQ PMAPNGAAIN  300
QFQSSSWGFK GNEAGSSSHE MPPDLGLGQI SQPLNSQFSC ELELPQQGRR QYMGLEHSRA  360
YDTSPQQMHW SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-32761491184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023919077.10.0squamosa promoter-binding-like protein 9
TrEMBLA0A2I4GI991e-180A0A2I4GI99_JUGRE; squamosa promoter-binding-like protein 9 isoform X1
STRINGVIT_08s0007g06270.t011e-179(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-63squamosa promoter binding protein-like 9