PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00182-snap-gene-1.35-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 482aa    MW: 54479.2 Da    PI: 9.2591
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00182-snap-gene-1.35-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-172268148
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                               +g WT+ Ed++l+ av+++ g++Wk+Ia++++ gR++ qc +rwqk+l
  maker-scaffold00182-snap-gene-1.35-mRNA-1 22 KGGWTEKEDKILAFAVQKFSGKNWKKIAECVP-GRSDVQCLHRWQKVL 68
                                               688*****************************.************986 PP
2Myb_DNA-binding55.11.8e-1774120148
                                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                                +g+W++eEd+l+ ++v++ G++ W+ I++ ++ gR +kqc++rw+++l
  maker-scaffold00182-snap-gene-1.35-mRNA-1  74 KGPWSKEEDDLICELVAKQGKKKWSEISKSLP-GRIGKQCRERWHNHL 120
                                                79******************************.*************97 PP
3Myb_DNA-binding58.41.6e-18127168245
                                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                            Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                                 +WT+eE+++l++a++++G++ W+ Ia+ ++ gRt++++k++w+
  maker-scaffold00182-snap-gene-1.35-mRNA-1 127 TAWTKEEELILINAHQMYGNK-WAEIAKLLP-GRTENSIKNHWN 168
                                                68*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.9431768IPR017930Myb domain
SuperFamilySSF466893.32E-162075IPR009057Homeodomain-like
SMARTSM007175.5E-142170IPR001005SANT/Myb domain
PfamPF002491.5E-152268IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-222481IPR009057Homeodomain-like
CDDcd001673.55E-122568No hitNo description
PROSITE profilePS5129430.05269124IPR017930Myb domain
SuperFamilySSF466897.75E-3171167IPR009057Homeodomain-like
SMARTSM007172.2E-1673122IPR001005SANT/Myb domain
PfamPF002491.5E-1674120IPR001005SANT/Myb domain
CDDcd001678.98E-1476120No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2682127IPR009057Homeodomain-like
SMARTSM007172.0E-17125173IPR001005SANT/Myb domain
PROSITE profilePS5129421.561125175IPR017930Myb domain
PfamPF002494.1E-17126168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-23128175IPR009057Homeodomain-like
CDDcd001673.71E-13128168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MEYCDTYFGT RQMTGPTRRS AKGGWTEKED KILAFAVQKF SGKNWKKIAE CVPGRSDVQC  60
LHRWQKVLHP DLVKGPWSKE EDDLICELVA KQGKKKWSEI SKSLPGRIGK QCRERWHNHL  120
NPNIKKTAWT KEEELILINA HQMYGNKWAE IAKLLPGRTE NSIKNHWNCS VAKKITVLSS  180
DLYTRETKAE SRKPKEVKQN DDRRVNWEGS ANDRSLDLVL GIAQGKDSNS KLPRTNDITK  240
LPRTIFDNGS AASPIRQDNF QKITHETSEA LSGTLQLSLS TPSDVSSCKK TTSNFHQGPA  300
FPDFGKRLSE SFSEPQYNVF SGDYFEIGNS KLGGQFKNSL SYGMTPEIHI ENKVVGAAED  360
TIPGRLCYRP LQWKDLNILL ETDSFPDTDS YIQTTSSPTL FHTPPTQNKG ENVDCSNLDS  420
ILRSAARTFN TPSIIRKRRL QISEKTENVN HNDYNSDNSG SLSNEKQLVL PPLKSQKLET  480
SA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-63211755159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-63211755159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023879168.10.0transcription factor MYB3R-5-like
TrEMBLA0A2I4E3B01e-176A0A2I4E3B0_JUGRE; myb-related protein 3R-1-like isoform X1
STRINGXP_008232807.11e-133(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149761314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.12e-81Homeodomain-like protein