PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00177-snap-gene-1.36-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 647aa    MW: 72904.2 Da    PI: 7.8284
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00177-snap-gene-1.36-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS354.81.3e-1082556451374
                                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppse 68 
                                                l++lL++cAeav ++dl+ a+++L +++ +asp gd  qRla++f +AL+arla+++sely+al++++
  maker-scaffold00177-snap-gene-1.36-mRNA-1 255 LRTLLMHCAEAVGNNDLKGANEVLLQIRLHASPFGDGSQRLAHCFSNALKARLAGTGSELYAALAAKK 322
                                                6789***************************************************************9 PP

                                       GRAS  69 tseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp 136
                                                ts   s++ l+a++lf  ++P++k+ ++ + q+I++ +e+ +r+Hii f+i +G+QWp L+q L++Rp
  maker-scaffold00177-snap-gene-1.36-mRNA-1 323 TS---SIHMLKAHSLFLSACPFMKIINFFTSQMIMDLAEKTTRLHIIHFGILYGFQWPGLIQRLSKRP 387
                                                99...9************************************************************** PP

                                       GRAS 137 egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202
                                                +gpp lRiTgv+ p++g   + ++eetg+rLa ++e+++vpfe+n+ +a+++e++++++L+++++E++
  maker-scaffold00177-snap-gene-1.36-mRNA-1 388 GGPPLLRITGVDIPQPGfqPASMVEETGRRLAIYCERFKVPFEYNA-IAQKWETIQVDDLKINKDEVI 454
                                                ****************99999*************************.7******************** PP

                                       GRAS 203 aVnlvlqlhrll.....................desvsleserdevLklvkslsPkvvvvveqeadhn 249
                                                +Vn+ ++  +l+                     +++ s ++  d+vL+l+k+++P+++++   +  +n
  maker-scaffold00177-snap-gene-1.36-mRNA-1 455 VVNSLYRFRYLFdetvvvnpssllplwvlyeiqNQNFSFTQ--DTVLNLIKRINPDLFIHGVVNGAYN 520
                                                ***********9*****************997766666666..************************* PP

                                       GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317
                                                s+ F  rf eal+ ysa fd+++a+ +re++er++ E+e+ g+e+ nv+acega+r+er e +++W+ 
  maker-scaffold00177-snap-gene-1.36-mRNA-1 521 SPFFTSRFREALYNYSAAFDMFDANTSREDQERMVFEQEIYGKEVLNVIACEGAKRVERPEVYKQWQV 588
                                                ******************************************************************** PP

                                       GRAS 318 rleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                                r ++aG++++pl++k+ +++k  +r ++ + + v+e+s++lv+gWk+r L ++S+W+
  maker-scaffold00177-snap-gene-1.36-mRNA-1 589 RNMRAGLRQLPLNQKIFNKMKDQVRLCYHKDFLVDEDSQWLVQGWKRRILSALSCWK 645
                                                ****************************889*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.82229625IPR005202Transcription factor GRAS
PfamPF035144.6E-106255645IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MASIEGCYSS EECNSADAVL NYIGQILMTE GLENGTCMFS VSALQASEKS LYDVLGEKYP  60
SSITQTPSFC NCYGCKNIVS ANNAGKSSLV CDFCQKKSCC VLAPPVEYTN LSSSSSSLPS  120
FSPPSNFANT ARGQGLVDPP PYTPLVPGSV SDSKTWGLLP HGKRDHSASR LIELKKNHRS  180
YQLECEPRER NKHLAVYNEV HDEPSEMFDE VLLFNSEDES AVSNPQASQI GRGKGSNCKA  240
TRQTERVNKK DLVDLRTLLM HCAEAVGNND LKGANEVLLQ IRLHASPFGD GSQRLAHCFS  300
NALKARLAGT GSELYAALAA KKTSSIHMLK AHSLFLSACP FMKIINFFTS QMIMDLAEKT  360
TRLHIIHFGI LYGFQWPGLI QRLSKRPGGP PLLRITGVDI PQPGFQPASM VEETGRRLAI  420
YCERFKVPFE YNAIAQKWET IQVDDLKINK DEVIVVNSLY RFRYLFDETV VVNPSSLLPL  480
WVLYEIQNQN FSFTQDTVLN LIKRINPDLF IHGVVNGAYN SPFFTSRFRE ALYNYSAAFD  540
MFDANTSRED QERMVFEQEI YGKEVLNVIA CEGAKRVERP EVYKQWQVRN MRAGLRQLPL  600
NQKIFNKMKD QVRLCYHKDF LVDEDSQWLV QGWKRRILSA LSCWKVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5026164425378Protein SCARECROW
5b3h_A2e-5026164424377Protein SCARECROW
5b3h_D2e-5026164424377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894867.10.0scarecrow-like protein 14
TrEMBLA0A2N9G7240.0A0A2N9G724_FAGSY; Uncharacterized protein
STRINGAquca_009_00954.10.0(Aquilegia coerulea)
STRINGPOPTR_0001s24870.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-162SCARECROW-like 14