PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00163-augustus-gene-1.30-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

HSF

Protein Properties

Length: 488aa MW: 54821.8 Da PI: 5.5287

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00163-augustus-gene-1.30-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.1	7.8e-35	20	110	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE- CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkv 65 Fl+k+ye+++d++++e++sws+n+nsfvv+++ ef + +Lp+yFkh+nf+SF+RQLn+YgF+k+ maker-scaffold00163-augustus-gene-1.30-mRNA-1 20 FLMKTYEMVDDSTTDEIVSWSSNKNSFVVWNPPEFGRLLLPTYFKHNNFSSFIRQLNTYGFRKI 83 9*************************************************************** PP --SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 66 kdeekkskskekiweFkhksFkkgkkellekikrkk 101 + e+ weF+++ F k++k+ll++i+r+k maker-scaffold00163-augustus-gene-1.30-mRNA-1 84 DPEK---------WEFANEDFMKDQKHLLKNIHRRK 110 999.........********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	4.8E-58	16	109	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	4.9E-35	16	109	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.7E-37	16	109	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.1E-30	20	109	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.1E-19	20	43	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.1E-19	58	70	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	59	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.1E-19	71	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MDGAPTTSGS GGGGGGPAPF LMKTYEMVDD STTDEIVSWS SNKNSFVVWN PPEFGRLLLP 60 TYFKHNNFSS FIRQLNTYGF RKIDPEKWEF ANEDFMKDQK HLLKNIHRRK PIHSHSHPQG 120 SMMDPERAAF EEEIERLARE KASLEANILR SKQQRSAAKL QFEDLKQRVD SMEQRQESLL 180 TFLDKALQEP TFAEILTRKI ESMDFSAYNK KRRLPQVDQS PPVMENSFVD NNSSSRPEFG 240 NVFHQDFSSK LRLELSPSVS DINLVSHSTQ CSNEDGDSPQ RKISGEPKGM QMRTEGFVFP 300 PETLDLSDTG ASFTLKMDST FSRKLPTNEN PRLQHPLQPS LTSNEEGDGH ISCHLNLTLA 360 SSPLQVNKSP YSARMPQVAE ETGKSPNSKS NTNSKESDTT DFPKSINLAG DTTLSSSQRA 420 SNNNQVPAAA PVRVNDVFWE QFLTERPGCL DNEEASSTYR ASPYDEQDDG RSSLGMSRNA 480 KNMEQLTL

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MDGAPTTSGS GGGGGGPAPF LMKTYEMVDD STTDEIVSWS SNKNSFVVWN PPEFGRLLLP  60
TYFKHNNFSS FIRQLNTYGF RKIDPEKWEF ANEDFMKDQK HLLKNIHRRK PIHSHSHPQG  120
SMMDPERAAF EEEIERLARE KASLEANILR SKQQRSAAKL QFEDLKQRVD SMEQRQESLL  180
TFLDKALQEP TFAEILTRKI ESMDFSAYNK KRRLPQVDQS PPVMENSFVD NNSSSRPEFG  240
NVFHQDFSSK LRLELSPSVS DINLVSHSTQ CSNEDGDSPQ RKISGEPKGM QMRTEGFVFP  300
PETLDLSDTG ASFTLKMDST FSRKLPTNEN PRLQHPLQPS LTSNEEGDGH ISCHLNLTLA  360
SSPLQVNKSP YSARMPQVAE ETGKSPNSKS NTNSKESDTT DFPKSINLAG DTTLSSSQRA  420
SNNNQVPAAA PVRVNDVFWE QFLTERPGCL DNEEASSTYR ASPYDEQDDG RSSLGMSRNA  480
KNMEQLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	4e-21	5	109	15	129	Heat shock factor protein 1
5d5v_B	4e-21	5	109	15	129	Heat shock factor protein 1
5d5v_D	4e-21	5	109	15	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023900563.1	0.0	heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-178	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A2N9IXH0	0.0	A0A2N9IXH0_FAGSY; Uncharacterized protein
STRING	XP_008222805.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4961	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-178	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]