PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold00152-snap-gene-1.25-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB | ||||||||
Protein Properties | Length: 998aa MW: 112125 Da PI: 4.9205 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 1e-13 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l maker-scaffold00152-snap-gene-1.25-mRNA-1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.8 | 1.6e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l maker-scaffold00152-snap-gene-1.25-mRNA-1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 4.8E-13 | 10 | 70 | No hit | No description |
CDD | cd00167 | 3.95E-12 | 10 | 53 | No hit | No description |
SuperFamily | SSF46689 | 7.55E-21 | 33 | 107 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 6.83E-31 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 2.9E-61 | 407 | 656 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 998 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TKGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDNRHR KRKRRGIDYN AEIPFEKKAP AGFFDVSDEN RPVDLVKFPV 240 TIEELEGKRR NDVEAQLRKQ DIAKNKIAQR QDAPSSILQA NKMNDPETVR KRSKLMLPAP 300 QISDHELEEI AKMGYASDLL AGSEEVSEGS GATRALLANY AQTPQPGMTP LRTPQRTPAG 360 KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP KKRELQTPNP MLTPSATPGG 420 AGLTPRIGMT PSRDGFSFSM TPKGTPLRDE LHINEDMDMH ESVKLEQRRQ ADLRRNLRSG 480 LTNLPQPKND YQIVMQPVPE DNEEQEEKIE EDMSDRLARE RAEEEARQQA LLRKRSKVLQ 540 RELPRPPAAS LDLIRNSLMR ADGDKSSFVP PTSIEQADEI IRKELLALLD HDNAKYPVDK 600 KMNKEKKKGS KRSADTTYVP EIEDFEEDEL KEADSLIKEE AQYLRVAMGH EDQSLDEFVE 660 AHKTCLGDLM YFPTRSAYGL SSVAGNMEKL AALQNEFDNV KRKMDGDKAK AETLGKKVEI 720 LTQGYEKRAR MGLWPQIEAT IKVMDTAATE LECFKALQKQ EQLAASYRIN GIREEVQKQK 780 ELERTLQGRY GDLVAELERV QSLMEKYRVQ AQKEEEIEAK NRALELAEAE EGKTVVPSTE 840 TPVPTSSDEQ LGSSVPVGPT HNENEGQQME ASGSPKTDMD VDIEKEHETL YIDTTVVQDN 900 GPEGSDIQLS ESERNPGGVL DTVVENDKMI TNLVDDAAGD SSMSTEVAKE AQDIEDQLNV 960 VEAGKLDGVL TKQEDQVSEA SGNDDFGSGD AMQVSGGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 802 | 3 | 800 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 802 | 3 | 800 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 802 | 3 | 800 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 802 | 3 | 800 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 802 | 3 | 800 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 802 | 3 | 800 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 802 | 3 | 800 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 802 | 3 | 800 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 802 | 3 | 800 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 802 | 3 | 800 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 802 | 3 | 800 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 802 | 3 | 800 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIDNRHRKRKRR |
2 | 199 | 204 | RKRKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023873090.1 | 0.0 | cell division cycle 5-like protein isoform X1 | ||||
Refseq | XP_023873091.1 | 0.0 | cell division cycle 5-like protein isoform X2 | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A2I4G564 | 0.0 | A0A2I4G564_JUGRE; cell division cycle 5-like protein | ||||
STRING | cassava4.1_000851m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4072 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Publications ? help Back to Top | |||
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