PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00094-augustus-gene-1.40-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Dof

Protein Properties

Length: 284aa MW: 31118.5 Da PI: 9.2802

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00094-augustus-gene-1.40-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.9	1.3e-39	28	87	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 k++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s maker-scaffold00094-augustus-gene-1.40-mRNA-1 28 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRS 87 7899******************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	24	86	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.9E-34	29	86	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.264	32	86	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	34	70	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MDTAQWPQGI GVVKPMEASR QMKTRPQKDQ ALNCPRCNST NTKFCYYNNY SLSQPRYFCK 60 TCRRYWTEGG SLRNVPVGGG SRKNKRSTPS TPPSASTSPA SSSKNKLPDL TSPPSFPQSA 120 SQNPKIHQGQ DLNLAYPPAH EDYNTISKFI EVPYSDNNSN SKSHHQNPST SSASPQLSAM 180 ELLKTGITSR GLSSFMPMSV SDSSAMYSTG FPLHEFKPSL NFSLEGFQGG YGSSLHQGVQ 240 ETGARLLFPI EDMKQVPNTS EFDQNRGQGD SSGYWNGMLG GGSW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023912132.1	0.0	dof zinc finger protein 1-like isoform X1
TrEMBL	A0A2I4GFZ6	1e-150	A0A2I4GFZ6_JUGRE; dof zinc finger protein DOF4.6-like
STRING	VIT_16s0098g01420.t01	1e-137	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	9e-53	Dof family protein