PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | maker-scaffold00031-augustus-gene-1.41-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 428aa MW: 47673.8 Da PI: 6.262 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 27.1 | 8.9e-09 | 16 | 59 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC+ C ++ H+ H++v maker-scaffold00031-augustus-gene-1.41-mRNA-1 16 ARACDSCVRKRARWYCPADDAFLCQVCDSSVHSAnqlarrHERV 59 578*****************************657788888876 PP | |||||||
2 | CCT | 68 | 2.5e-23 | 372 | 415 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a maker-scaffold00031-augustus-gene-1.41-mRNA-1 372 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 415 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 11.177 | 14 | 61 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.6E-11 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.3E-7 | 16 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.48E-10 | 17 | 61 | No hit | No description |
Pfam | PF06203 | 7.2E-18 | 372 | 414 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.083 | 372 | 414 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 428 aa Download sequence Send to blast |
MICDKNVANA VGGKTARACD SCVRKRARWY CPADDAFLCQ VCDSSVHSAN QLARRHERVR 60 LKTASFKSSD AAVQNSVPSW HRGFTRKART PRHGKPVNYQ TPKSKEPLRN PFPIVPEVGA 120 DEISHEENEE QLLYRVPIFD PFVAELCTPT TPKEAVAAVN SSPNGSETKV LLANCGHDVD 180 NLHGFIPSDM DLAEFAADVE SLLGRGLENE CFGMEELGLM DCKEKVMKEG CLGSGRVKVE 240 EEEGTESVTA CLVDDSEIDM MREPFELSFD YDSPATCEEE DEKAIVMRNI DGGGYEAEDK 300 KKKKKILLRL DYGAVIAAWA SQGSPWTNGD RPDFDPDECW PDCMGTCSID FHHPYGDFGG 360 TGGNPAMVDG GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRASFAAG 420 PAFPLLSK |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 382 | 398 | RRTRLFSKKIRYEVRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023906834.1 | 0.0 | zinc finger protein CONSTANS-LIKE 16-like | ||||
Swissprot | Q8RWD0 | 1e-110 | COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | A0A2N9G6S9 | 0.0 | A0A2N9G6S9_FAGSY; Uncharacterized protein | ||||
STRING | VIT_01s0011g03520.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25440.1 | 1e-111 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
---|---|---|---|
|