PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00028-augustus-gene-0.47-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family LSD
Protein Properties Length: 137aa    MW: 14805.8 Da    PI: 6.3721
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00028-augustus-gene-0.47-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.21.1e-124871124
                                        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                                                   Cg Cr+lL YPrGA++V+C++C+t
  maker-scaffold00028-augustus-gene-0.47-mRNA-1 48 CGTCRNLLKYPRGARHVHCSCCHT 71
                                                   ***********************8 PP
2zf-LSD131.52.9e-1086110125
                                        zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                                                    Cg+C +lL+Y  GA+sV+C++C +V
  maker-scaffold00028-augustus-gene-0.47-mRNA-1  86 CGNCEVLLMYQHGASSVKCSSCCFV 110
                                                    **********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.5E-154575IPR005735Zinc finger, LSD1-type
PfamPF069439.3E-104871IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.2E-983111IPR005735Zinc finger, LSD1-type
PfamPF069435.5E-1086110IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MGSKEMEEEE DEGPPPGWQS IPLPSSQPPA PAPAPAPPSP SEMAQMVCGT CRNLLKYPRG  60
ARHVHCSCCH TGNFVLEAHE VGLVKCGNCE VLLMYQHGAS SVKCSSCCFV TEIGEHNRRP  120
PWSVQQGQPP QPPNPVH
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018820172.13e-68PREDICTED: protein LOL2 isoform X1
SwissprotO654261e-39LOL2_ARATH; Protein LOL2
TrEMBLA0A2I4ELA68e-67A0A2I4ELA6_JUGRE; protein LOL2 isoform X1
STRINGEMJ134372e-57(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.15e-34lsd one like 2