PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00005-snap-gene-2.51-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 682aa    MW: 75126.8 Da    PI: 6.504
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00005-snap-gene-2.51-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.92e-141391856
                                               HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                                   Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                               +F+++++p++++r +L+++l+L  rq+k+WFqNrR+++k
  maker-scaffold00005-snap-gene-2.51-mRNA-1  1 MFKECPHPDEKQRLQLSRELSLAPRQIKFWFQNRRTQMK 39
                                               69**********************************998 PP
2START172.62.6e-541834152206
                                                HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHH CS
                                      START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvla 59 
                                                +a +a++el+++ + ++p+W+ks+    + ++ + + ++f+++++       ++ea+r+s vv+m+  
  maker-scaffold00005-snap-gene-2.51-mRNA-1 183 IAATAMDELLRLLQTNDPLWMKSPtdgrDVLDLESYERIFPRGNAnlknphVRIEASRDSCVVIMNGL 250
                                                6789*********************999999999******99999*****99**************** PP

                                                HHHHHHCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEE CS
                                      START  60 llveellddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyir 116
                                                 lv  ++d++ +W e ++     a tle issg      g lqlm+ elq+lsplvp R+f f+Ry++
  maker-scaffold00005-snap-gene-2.51-mRNA-1 251 ALVDMFMDSN-KWVELFPtivsMARTLEEISSGmigshsGSLQLMYEELQVLSPLVPtREFCFLRYCQ 317
                                                **********.******9999999******************************************** PP

                                                E.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE........EEEEEEE-EE--SSX CS
                                      START 117 qlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh........skvtwvehvdlkgrl 176
                                                q ++g+w+ivdvS d  ++++  +s  R+++lpSg+li++++ng+         +vtwvehv+ +++ 
  maker-scaffold00005-snap-gene-2.51-mRNA-1 318 QIEQGSWAIVDVSYDISRDNQ-FASQYRSHRLPSGCLIQDMPNGYskvvklviKCVTWVEHVEIEDKA 384
                                                ********************9.8**********************88888888789************ PP

                                                X.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                                      START 177 p.hwllrslvksglaegaktwvatlqrqcek 206
                                                p h l+r l++sgla+ga++w+atl+r ce+
  maker-scaffold00005-snap-gene-2.51-mRNA-1 385 PtHRLYRDLIHSGLAFGAQRWLATLKRMCER 415
                                                *****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000466.4E-12139IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.8E-14146IPR009057Homeodomain-like
SuperFamilySSF466892.34E-12144IPR009057Homeodomain-like
PROSITE profilePS5007114.803141IPR001356Homeobox domain
SMARTSM003895.2E-4145IPR001356Homeobox domain
CDDcd000861.25E-12242No hitNo description
PROSITE patternPS0002701639IPR017970Homeobox, conserved site
PROSITE profilePS5084849.205173418IPR002913START domain
SuperFamilySSF559612.75E-34174416No hitNo description
CDDcd088757.97E-117177414No hitNo description
SMARTSM002344.0E-49182415IPR002913START domain
PfamPF018521.1E-46183415IPR002913START domain
Gene3DG3DSA:3.30.530.204.0E-7269414IPR023393START-like domain
SuperFamilySSF559615.08E-26437674No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009828Biological Processplant-type cell wall loosening
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MFKECPHPDE KQRLQLSREL SLAPRQIKFW FQNRRTQMKA QHERADNCAL RAENDKIRCE  60
NIAIREALRN VICPSCGGPP VTEDSYFDEQ KLRMENAQLK EELDRVSSIA AKYIGRPISQ  120
LPPVQPIPIS SLDLSMGSFG GQGISGPSLD LDLLPGSTST LPSLPPFQPA CLSDMDKSLM  180
TDIAATAMDE LLRLLQTNDP LWMKSPTDGR DVLDLESYER IFPRGNANLK NPHVRIEASR  240
DSCVVIMNGL ALVDMFMDSN KWVELFPTIV SMARTLEEIS SGMIGSHSGS LQLMYEELQV  300
LSPLVPTREF CFLRYCQQIE QGSWAIVDVS YDISRDNQFA SQYRSHRLPS GCLIQDMPNG  360
YSKVVKLVIK CVTWVEHVEI EDKAPTHRLY RDLIHSGLAF GAQRWLATLK RMCERFACLM  420
VTSTSTTRDL GGVIPSPDGK RSMMKLAQRM VNNFCSSIST SNGHRWTTLS GLNEVGVRVT  480
VHKSTDPGQP NGVVLSAATT IWLPISPQNV FNFFKDERTR PQWDVLSNGN AVQEVAHIAN  540
GSHPGNCISV LRVGALNNSQ NNMLILQESC MDSSGSLIVY CPVDLPAINI AMSGEDPSYI  600
PLLPSGFTIS PDGRAEQGDG ASTSSSTHGH GRSGGSLITV AFQILVSSLP SAKLNLESVT  660
TVNNLIGTTV QQIKAALNCP SS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00232DAPTransfer from AT1G73360Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023919022.10.0homeobox-leucine zipper protein HDG11-like
SwissprotQ9FX310.0HDG11_ARATH; Homeobox-leucine zipper protein HDG11
TrEMBLA0A2N9ELU80.0A0A2N9ELU8_FAGSY; Uncharacterized protein
STRINGXP_008240378.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Cai XT,Xu P,Wang Y,Xiang CB
    Activated expression of AtEDT1/HDG11 promotes lateral root formation in Arabidopsis mutant edt1 by upregulating jasmonate biosynthesis.
    J Integr Plant Biol, 2015. 57(12): p. 1017-30
    [PMID:25752924]
  5. Yu LH, et al.
    Arabidopsis EDT1/HDG11 improves drought and salt tolerance in cotton and poplar and increases cotton yield in the field.
    Plant Biotechnol. J., 2016. 14(1): p. 72-84
    [PMID:25879154]
  6. Zhu Z, et al.
    Overexpression of AtEDT1/HDG11 in Chinese Kale (Brassica oleracea var. alboglabra) Enhances Drought and Osmotic Stress Tolerance.
    Front Plant Sci, 2016. 7: p. 1285
    [PMID:27625663]
  7. Liu Y, et al.
    Overexpression of AtEDT1 promotes root elongation and affects medicinal secondary metabolite biosynthesis in roots of transgenic Salvia miltiorrhiza.
    Protoplasma, 2017. 254(4): p. 1617-1625
    [PMID:27915455]
  8. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  9. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  10. Zheng G, et al.
    Over-Expression of Arabidopsis EDT1 Gene Confers Drought Tolerance in Alfalfa (Medicago sativa L.).
    Front Plant Sci, 2017. 8: p. 2125
    [PMID:29326737]