PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00005-augustus-gene-0.28-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 242aa    MW: 27508.7 Da    PI: 4.6229
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00005-augustus-gene-0.28-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.85.8e-5561331128
                                            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFs 62 
                                                    lppGfrFhPtdeelv++yLk+k++g+++el ++i+evd+yk+ePw+L  k  + +++ ewyfF 
  maker-scaffold00005-augustus-gene-0.28-mRNA-1   6 LPPGFRFHPTDEELVNYYLKRKINGQEIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFG 68 
                                                    79****************************.99**************84335556888****** PP

                                            NAM  63 krdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                                                    +rd+ky++g r+nrat++gyWk+tgkd++v++ +++ +g+kktLv+y+grap+g +tdWvmhey
  maker-scaffold00005-augustus-gene-0.28-mRNA-1  69 PRDRKYPNGFRTNRATRAGYWKSTGKDRRVTC-QSRPIGMKKTLVYYRGRAPQGIRTDWVMHEY 131
                                                    ********************************.999**************************** PP

                                            NAM 127 rl 128
                                                    rl
  maker-scaffold00005-augustus-gene-0.28-mRNA-1 132 RL 133
                                                    98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.06E-634157IPR003441NAC domain
PROSITE profilePS5100559.7476156IPR003441NAC domain
PfamPF023653.2E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKING QEIELDIIPE VDLYKCEPWE LAEKSFLPSR  60
DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVTC QSRPIGMKKT LVYYRGRAPQ  120
GIRTDWVMHE YRLDDKECED PSGIQDTYAL CRVFKKNGIC SEIEEQGQCS LSLLESSQGV  180
INEYETMSPD VTMASSSCLD EEDKDDSWMQ FITDDAWCSS NAAVGGGGGG GGEEVSRVAF  240
TN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-54215711169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00363DAPTransfer from AT3G17730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023900781.11e-168NAC domain-containing protein 86
SwissprotQ9FFI58e-90NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A2I4DNF81e-160A0A2I4DNF8_JUGRE; NAC domain-containing protein 86-like
STRINGGLYMA09G29760.21e-160(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95643343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-136NAC domain containing protein 57
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]