PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00003-snap-gene-2.41-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

CAMTA

Protein Properties

Length: 994aa MW: 111210 Da PI: 5.382

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00003-snap-gene-2.41-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	178.7	7.4e-56	16	128	5	117
CG-1 5 kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhek 72 +rwlk+ e++ iL+n+ek++lt+e++++p+sgsl+L+n++++r+fr+DG++w+kkkdg+tv E+he+ maker-scaffold00003-snap-gene-2.41-mRNA-1 16 PTRWLKPAEVLFILQNHEKYQLTEEPPQKPTSGSLFLFNKRVLRFFRRDGHNWRKKKDGRTVGEAHER 83 68**************************************************************** PP CG-1 73 LKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylev 117 LKvg+ve+l+cyYah+e+np+fqrr+yw+L+ ++e+ivlvhy+e+ maker-scaffold00003-snap-gene-2.41-mRNA-1 84 LKVGNVEALNCYYAHGEQNPSFQRRSYWMLDPAYEHIVLVHYRET 128 *****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	82.137	8	134	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.0E-77	11	129	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.3E-48	15	127	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	4.1E-8	429	517	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	1.13E-17	432	515	IPR014756	Immunoglobulin E-set
CDD	cd00102	1.30E-4	432	516	No hit	No description
Pfam	PF01833	1.9E-7	432	515	IPR002909	IPT domain
Gene3D	G3DSA:1.25.40.20	1.0E-16	627	723	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.733	629	721	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.02E-17	631	723	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	8.58E-15	634	721	No hit	No description
Pfam	PF12796	3.2E-8	645	722	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	5.2E-4	662	691	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.22	662	694	IPR002110	Ankyrin repeat
SMART	SM00248	2700	701	730	IPR002110	Ankyrin repeat
SMART	SM00015	9.4	779	801	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.876	780	808	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	7.43E-9	780	885	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	5.3	833	855	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.876	834	863	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0039	836	854	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0018	856	878	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.066	858	881	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.7E-5	859	878	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 994 aa Download sequence Send to blast
MTQSGYDIND LFREAPTRWL KPAEVLFILQ NHEKYQLTEE PPQKPTSGSL FLFNKRVLRF 60 FRRDGHNWRK KKDGRTVGEA HERLKVGNVE ALNCYYAHGE QNPSFQRRSY WMLDPAYEHI 120 VLVHYRETNE GKATSGSVTL LSPGSSSPFS QSPSSYTKNP GSNSIISDFF DPYQSLSSPE 180 VSSETAIKNN GMDHLDRVDR REQRESSPEL EVTQALRRLE EQLSLNEDSI KDICTFYSQD 240 ENSNDSDILQ YERENAKQDQ CAALLHGPEH IDQFYGGHVV IQDSNNLEFL SAAGDSSKNH 300 NQSFGHDFTD GSKGSSSWTE MFESYNTSSG VESQSENLYI LDGNGKPPSS GKAPKEEQER 360 GHWLNFDVDN FENTSMSLAE EADRFRFPAY SSEIESHETN SNYYMTFFDQ GQTGIPLEAD 420 SSLTVAQKQK FTIREISPEW GYATEATKVF IIGSFLCDPL ESAWTCMFGD LEAPIQIIQE 480 GVICCEAPPH LPGKVTLCIT SGNRESCSEV REFEYIKTSA CAHCNSPTTE AAKSPEELLL 540 LVRFVQMLLS ESLMQKGDTV ESEIHLLRRS KADDDSWGHV IEALLVGSGT SSSMIDWILQ 600 ELLKDKLCQW LSSISQEGPD QTGCSLSKKE QGIIHMVAGL GFEWALNPIL NYGVNINFRD 660 INGWTALHWA ARFGREKMVA ALIASGASAG AVTDPNSQDP RGKTAASIAA TNGHKGLAGY 720 LSEVALTSHL SSLTLEESEL SKGSAEVEAE ITVNSISKGS LAANEDQISL KDTLAAVRNA 780 AQAAARIQSA FRAHSFRKRL HRQASSAAII DDYGINSDDI SALSRLAFRN PRVYNSAALS 840 IQKKYRGWKS RKDFLAFRQK IVKIQAHVRG YQVRKHYKEI CWAVGILDKV VLRWRRKGVG 900 LRGFRNETQI IDETEDEDIL KVFRKQKVDV AIEEAVSRVL SMVDSPEARQ QYHRVLKIYR 960 QAKAELVGMD SEGVGSTSLG DAFGMEDEDL YQFP

Sequence ? help Back to Top

Protein Sequence Length: 994 aa Download sequence Send to blast

MTQSGYDIND LFREAPTRWL KPAEVLFILQ NHEKYQLTEE PPQKPTSGSL FLFNKRVLRF  60
FRRDGHNWRK KKDGRTVGEA HERLKVGNVE ALNCYYAHGE QNPSFQRRSY WMLDPAYEHI  120
VLVHYRETNE GKATSGSVTL LSPGSSSPFS QSPSSYTKNP GSNSIISDFF DPYQSLSSPE  180
VSSETAIKNN GMDHLDRVDR REQRESSPEL EVTQALRRLE EQLSLNEDSI KDICTFYSQD  240
ENSNDSDILQ YERENAKQDQ CAALLHGPEH IDQFYGGHVV IQDSNNLEFL SAAGDSSKNH  300
NQSFGHDFTD GSKGSSSWTE MFESYNTSSG VESQSENLYI LDGNGKPPSS GKAPKEEQER  360
GHWLNFDVDN FENTSMSLAE EADRFRFPAY SSEIESHETN SNYYMTFFDQ GQTGIPLEAD  420
SSLTVAQKQK FTIREISPEW GYATEATKVF IIGSFLCDPL ESAWTCMFGD LEAPIQIIQE  480
GVICCEAPPH LPGKVTLCIT SGNRESCSEV REFEYIKTSA CAHCNSPTTE AAKSPEELLL  540
LVRFVQMLLS ESLMQKGDTV ESEIHLLRRS KADDDSWGHV IEALLVGSGT SSSMIDWILQ  600
ELLKDKLCQW LSSISQEGPD QTGCSLSKKE QGIIHMVAGL GFEWALNPIL NYGVNINFRD  660
INGWTALHWA ARFGREKMVA ALIASGASAG AVTDPNSQDP RGKTAASIAA TNGHKGLAGY  720
LSEVALTSHL SSLTLEESEL SKGSAEVEAE ITVNSISKGS LAANEDQISL KDTLAAVRNA  780
AQAAARIQSA FRAHSFRKRL HRQASSAAII DDYGINSDDI SALSRLAFRN PRVYNSAALS  840
IQKKYRGWKS RKDFLAFRQK IVKIQAHVRG YQVRKHYKEI CWAVGILDKV VLRWRRKGVG  900
LRGFRNETQI IDETEDEDIL KVFRKQKVDV AIEEAVSRVL SMVDSPEARQ QYHRVLKIYR  960
QAKAELVGMD SEGVGSTSLG DAFGMEDEDL YQFP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023918465.1	0.0	calmodulin-binding transcription activator 4
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A2N9HFF5	0.0	A0A2N9HFF5_FAGSY; Uncharacterized protein
STRING	XP_008222185.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4548	29	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]