PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold00001-augustus-gene-2.48-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | HB-PHD | ||||||||
Protein Properties | Length: 805aa MW: 90189.2 Da PI: 8.9587 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32.4 | 1.6e-10 | 588 | 632 | 9 | 53 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e L ++F++n p ++ +e+L+k+lgL+ ++V+ WF+N R+ maker-scaffold00001-augustus-gene-2.48-mRNA-1 588 RNAVEKLRQVFAENELPPRAVKEDLSKELGLDPEKVSKWFKNARY 632 567899*************************************97 PP | |||||||
2 | PHD | 34.5 | 4.8e-12 | 321 | 376 | 1 | 51 |
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ + +++++lCd +C+ +fH+kCl+++l+++++p g w+C+ C++k maker-scaffold00001-augustus-gene-2.48-mRNA-1 321 FCAKCKLreAFPDNDIILCDgTCNCAFHQKCLDPPLDTDNIPPGdqGWFCKFCECK 376 699999854455********56********************9999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 1.51E-13 | 313 | 379 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 4.7E-11 | 318 | 377 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.211 | 319 | 376 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 9.7E-8 | 321 | 374 | IPR001965 | Zinc finger, PHD-type |
Pfam | PF00628 | 1.8E-9 | 321 | 376 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15504 | 1.38E-30 | 321 | 373 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 322 | 373 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50071 | 12.276 | 577 | 637 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-10 | 578 | 639 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-11 | 579 | 631 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.3E-9 | 579 | 641 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.32E-9 | 580 | 641 | No hit | No description |
Pfam | PF00046 | 5.0E-8 | 588 | 632 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 805 aa Download sequence Send to blast |
MHGTAKKLTF QESSRSCYSK TESGSKLIAS FKLKKGCKIS HGKKHKPKSK SHVNTVGSNL 60 SKRTVTESVS RGPKNDSISR KFVSKKILHK ALDTKSSKKQ SSLKLQGGKP SLNSSEGNGK 120 NADGEVKITN LKKRKKRRRQ KDTAELDEAS RLKRRTRYLL IKMKLEQNLI DAYSGEGWKG 180 QREPTFEEAS RSVKLECSSE LETSKLTSAP VIGQPTIGLS MAVAARTTRP ILAPLLGGSP 240 EEELQATATS RPLSDLGNIP PTSFREKIKP EKELQRAKKQ ILKCKLGIRD AIRQLDSLSS 300 EGCIEDSVIA PDGSVYHEHI FCAKCKLREA FPDNDIILCD GTCNCAFHQK CLDPPLDTDN 360 IPPGDQGWFC KFCECKMEIL EAMNAHLGTH FSMNSIWQDI FKEEAAFPDG GNALLDPAEE 420 WPSDDSDDDD YNPERRENSC TISGAEADEN ASDDTSSSTS LSWSLDGEVF SGKESMGCEN 480 HFANTSLDSD ESTEGEIICG PRQRRTVDYK KLYDEMFGKD APPYEQVSED EDWGPAKRKR 540 REKESDAAST LMTLYESEKK CSNSDTREVK KKCPLETSTR RAFFRIPRNA VEKLRQVFAE 600 NELPPRAVKE DLSKELGLDP EKVSKWFKNA RYLALKSRKG EIGTQLHSFK ESRLENVEKS 660 ATNVEASEGT SAEIMVHMPK NVKNQRKRLK SLTGTSKKKQ HIRSSLGSPS NGIEDIVEFS 720 DDVSLKKLLK ARTKERKRIN VMAGGGGCQV AEMQMERLCE VKDRLETIKQ KLLRLQNDKA 780 KNSDRCHLFQ LNVIYVPVAE LREKV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 135 | KKRKK |
2 | 132 | 138 | KRKKRRR |
3 | 537 | 542 | RKRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM488059 | 2e-34 | AM488059.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X159684.7, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023909223.1 | 0.0 | pathogenesis-related homeodomain protein | ||||
Swissprot | P48785 | 1e-140 | PRH_ARATH; Pathogenesis-related homeodomain protein | ||||
TrEMBL | A0A2I4H8B0 | 0.0 | A0A2I4H8B0_JUGRE; pathogenesis-related homeodomain protein-like isoform X1 | ||||
STRING | XP_008223879.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5275 | 33 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.1 | 1e-139 | pathogenesis related homeodomain protein A |
Publications ? help Back to Top | |||
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