PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00001-augustus-gene-2.48-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HB-PHD
Protein Properties Length: 805aa    MW: 90189.2 Da    PI: 8.9587
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00001-augustus-gene-2.48-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.41.6e-10588632953
                                                    HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                                       Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                                                    ++ +e L ++F++n  p ++ +e+L+k+lgL+ ++V+ WF+N R+
  maker-scaffold00001-augustus-gene-2.48-mRNA-1 588 RNAVEKLRQVFAENELPPRAVKEDLSKELGLDPEKVSKWFKNARY 632
                                                    567899*************************************97 PP

2PHD34.54.8e-12321376151
                                                    SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                                            PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                                                    +C+ C+   +  +++++lCd +C+ +fH+kCl+++l+++++p g   w+C+ C++k
  maker-scaffold00001-augustus-gene-2.48-mRNA-1 321 FCAKCKLreAFPDNDIILCDgTCNCAFHQKCLDPPLDTDNIPPGdqGWFCKFCECK 376
                                                    699999854455********56********************9999*******985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.51E-13313379IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.7E-11318377IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.211319376IPR019787Zinc finger, PHD-finger
SMARTSM002499.7E-8321374IPR001965Zinc finger, PHD-type
PfamPF006281.8E-9321376IPR019787Zinc finger, PHD-finger
CDDcd155041.38E-30321373No hitNo description
PROSITE patternPS013590322373IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007112.276577637IPR001356Homeobox domain
SuperFamilySSF466897.7E-10578639IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-11579631IPR009057Homeodomain-like
SMARTSM003891.3E-9579641IPR001356Homeobox domain
CDDcd000869.32E-9580641No hitNo description
PfamPF000465.0E-8588632IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    Send to blast
MHGTAKKLTF QESSRSCYSK TESGSKLIAS FKLKKGCKIS HGKKHKPKSK SHVNTVGSNL  60
SKRTVTESVS RGPKNDSISR KFVSKKILHK ALDTKSSKKQ SSLKLQGGKP SLNSSEGNGK  120
NADGEVKITN LKKRKKRRRQ KDTAELDEAS RLKRRTRYLL IKMKLEQNLI DAYSGEGWKG  180
QREPTFEEAS RSVKLECSSE LETSKLTSAP VIGQPTIGLS MAVAARTTRP ILAPLLGGSP  240
EEELQATATS RPLSDLGNIP PTSFREKIKP EKELQRAKKQ ILKCKLGIRD AIRQLDSLSS  300
EGCIEDSVIA PDGSVYHEHI FCAKCKLREA FPDNDIILCD GTCNCAFHQK CLDPPLDTDN  360
IPPGDQGWFC KFCECKMEIL EAMNAHLGTH FSMNSIWQDI FKEEAAFPDG GNALLDPAEE  420
WPSDDSDDDD YNPERRENSC TISGAEADEN ASDDTSSSTS LSWSLDGEVF SGKESMGCEN  480
HFANTSLDSD ESTEGEIICG PRQRRTVDYK KLYDEMFGKD APPYEQVSED EDWGPAKRKR  540
REKESDAAST LMTLYESEKK CSNSDTREVK KKCPLETSTR RAFFRIPRNA VEKLRQVFAE  600
NELPPRAVKE DLSKELGLDP EKVSKWFKNA RYLALKSRKG EIGTQLHSFK ESRLENVEKS  660
ATNVEASEGT SAEIMVHMPK NVKNQRKRLK SLTGTSKKKQ HIRSSLGSPS NGIEDIVEFS  720
DDVSLKKLLK ARTKERKRIN VMAGGGGCQV AEMQMERLCE VKDRLETIKQ KLLRLQNDKA  780
KNSDRCHLFQ LNVIYVPVAE LREKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131135KKRKK
2132138KRKKRRR
3537542RKRREK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4880592e-34AM488059.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X159684.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023909223.10.0pathogenesis-related homeodomain protein
SwissprotP487851e-140PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A2I4H8B00.0A0A2I4H8B0_JUGRE; pathogenesis-related homeodomain protein-like isoform X1
STRINGXP_008223879.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-139pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]