PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold30895-abinit-gene-0.1-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 304aa    MW: 34768.7 Da    PI: 5.3317
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold30895-abinit-gene-0.1-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS48.71.3e-15341413121
                                                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvse 59 
                                                           +lL +  +++++++ el q +L r+se  sp g++++Rla y+ +   + +++    
  augustus_masked-scaffold30895-abinit-gene-0.1-mRNA-1  34 HLLKAYGDVFEKDQRELGQVILRRISEKGSPVGKTLERLALYLSK--DSEINQ---- 84 
                                                           77888889999999****************************987..566666.... PP

                                                  GRAS  60 lykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege.ervHii 115
                                                                + +++   + ++  aa+++++++ P  kf+h++aN+aIlea+  + e++H +
  augustus_masked-scaffold30895-abinit-gene-0.1-mRNA-1  85 ---GENLKQE---SLKNFKAAFQALYQALPDGKFAHFAANSAILEAIPDDvETIHTV 135
                                                           ...2333344...4889999***************************9999****** PP

                                                  GRAS 116 Dfdisq 121
                                                           Dfd+++
  augustus_masked-scaffold30895-abinit-gene-0.1-mRNA-1 136 DFDMGE 141
                                                           ***975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.5476304IPR005202Transcription factor GRAS
PfamPF035144.6E-1334141IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MNSESLLTDV VSVQSSLTLP GEDMEIDKQL GLFHLLKAYG DVFEKDQREL GQVILRRISE  60
KGSPVGKTLE RLALYLSKDS EINQGENLKQ ESLKNFKAAF QALYQALPDG KFAHFAANSA  120
ILEAIPDDVE TIHTVDFDMG EEEDCNGAPL WRFEETKRRL YDRARAFGLK LKVEEMELMI  180
WGRSRSLAMD FLRAAEELIA ISANCSTIHK EARIALECHF VAPYISSLAW FQRWKEIRGG  240
CHLEAGLGLV GKRLSKEIFM EAREMVEEEE NKYRIKIEGH IGNEMVLEWK RNTTVRISNW  300
TNHS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018825795.11e-108PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A2N9FI981e-134A0A2N9FI98_FAGSY; Uncharacterized protein
STRINGEMJ077652e-92(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.17e-09GRAS family protein