PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold18797-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WOX
Protein Properties Length: 382aa    MW: 42193.9 Da    PI: 7.2116
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold18797-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.87.6e-1855115257
                                                           T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHH CS
                                              Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRa 53 
                                                           ++R+++++eq+++Le+ F++   +p ++e++++ ++l    ++ +++V++WFqNr+ 
  augustus_masked-scaffold18797-abinit-gene-0.0-mRNA-1  55 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKS 111
                                                           89*****************99************************************ PP

                                                           HHHC CS
                                              Homeobox  54 kekk 57 
                                                           + k+
  augustus_masked-scaffold18797-abinit-gene-0.0-mRNA-1 112 RSKH 115
                                                           *995 PP
2Wus_type_Homeobox112.22.7e-3654116264
                                     Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrk 58 
                                                           +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk
  augustus_masked-scaffold18797-abinit-gene-0.0-mRNA-1  54 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRK 110
                                                           689****************************************************** PP

                                     Wus_type_Homeobox  59 aRerqk 64 
                                                           +R+++k
  augustus_masked-scaffold18797-abinit-gene-0.0-mRNA-1 111 SRSKHK 116
                                                           ****99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.76E-1250119IPR009057Homeodomain-like
PROSITE profilePS5007110.51151116IPR001356Homeobox domain
SMARTSM003896.8E-953120IPR001356Homeobox domain
CDDcd000862.97E-854116No hitNo description
Gene3DG3DSA:1.10.10.608.0E-754115IPR009057Homeodomain-like
PfamPF000462.0E-1555115IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPCNTH HQWQHDINSS LMSNECHRTP YNSVPGCEER SPEPKPRWNP  60
KPEQIRILEA IFNSGMVNPP RDEIRKIRAQ LQEYGQVGDA NVFYWFQNRK SRSKHKLRHL  120
QNSKNQSQQA QNNPPITSLA PTTTTAPSSS SSSSEKSSPK APLYKTYSMG FPNITDVSNS  180
PTASVNQTYF QSHGEVLPEP FFFPVQQPGG SVHHISEGTS SFTQGFCFSE LSDVVQVPEH  240
TVGPCTSLFL SEMMNDGGSK KDQEEKVMKI NPQLNYTLTT HPTTASPSTT TTGSSVPSSI  300
NQNQGVGESG AVGAVGPEKS TVFINDVAFE VAAGPFNVRE AFGEEAVLIH FSGQPVLTNE  360
WGVTLQPLQH GAFYYLVRTL SF
Functional Description ? help Back to Top
Source Description
UniProtHomeodomain transcription factor required for meristem growth and early development (PubMed:15753038). Promotes cell proliferation and prevents premature differentiation in meristematic tissues during postembryonic development (PubMed:15753038). Essential for maintaining tissue growth during embryogenesis (PubMed:17706632). May act by repressing TSS to promote meristematic proliferation (PubMed:21185286). Involved in the transcriptional activation of a subset of cytokinin response factors (PubMed:20110319). May act as a negative regulator of cytokinin signaling in the dark (PubMed:21057190). {ECO:0000269|PubMed:15753038, ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:20110319, ECO:0000269|PubMed:21057190, ECO:0000303|PubMed:21185286}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2. {ECO:0000269|PubMed:21316593}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023908458.10.0WUSCHEL-related homeobox 9-like
RefseqXP_023908459.10.0WUSCHEL-related homeobox 9-like
SwissprotQ6X7J48e-91WOX9_ARATH; WUSCHEL-related homeobox 9
TrEMBLA0A2N9ELQ10.0A0A2N9ELQ1_FAGSY; Uncharacterized protein
STRINGEOY281170.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38243361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-63homeobox-3
Publications ? help Back to Top
  1. Wang W, et al.
    Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice.
    PLoS Genet., 2014. 10(3): p. e1004154
    [PMID:24625559]
  2. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    Wuschel-related homeobox 8/9 is important for proper embryo patterning in the gymnosperm Norway spruce.
    J. Exp. Bot., 2014. 65(22): p. 6543-52
    [PMID:25205582]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  4. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  5. Blein T,Pautot V,Laufs P
    Combinations of Mutations Sufficient to Alter Arabidopsis Leaf Dissection.
    Plants (Basel), 2013. 2(2): p. 230-47
    [PMID:27137374]