PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold15621-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 550aa    MW: 62098.6 Da    PI: 5.104
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold15621-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS73.63.7e-232243453123
                                                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svs 58 
                                                           e L+++Ae v+ +++ +a++lL+r  + +s++g+p+qRl+ yf +AL++r+ r ++ 
  augustus_masked-scaffold15621-abinit-gene-0.0-mRNA-1 224 EFLFTAAEKVACQQFDRASKLLNRCDQWSSNTGNPVQRLVYYFSKALRRRIDReTGR 280
                                                           789**************************************************4444 PP

                                                  GRAS  59 elykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHii 115
                                                            + k l  s + ++   +   a  +f+e +P+ ++++++  qaI+e v+g++++Hii
  augustus_masked-scaffold15621-abinit-gene-0.0-mRNA-1 281 ITLKGLGKSFDLHEALMRPDPAIFTFHERTPFSQVQQFAGIQAIVENVAGARKIHII 337
                                                           4555564333333455555667778******************************** PP

                                                  GRAS 116 DfdisqGl 123
                                                           Df+i+ G+
  augustus_masked-scaffold15621-abinit-gene-0.0-mRNA-1 338 DFSIQSGI 345
                                                           ****9995 PP
2GRAS104.12e-32345485144291
                                                  GRAS 144 iTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                                                           iT+vg    +sk+ +eetg++La++A++++++f+f+vl+++++ dl+ + ++++ +E
  augustus_masked-scaffold15621-abinit-gene-0.0-mRNA-1 345 ITAVGI---TSKHLIEETGKQLASVAQTMNLTFSFKVLMVSDMLDLKEDLFELDANE 398
                                                           788887...57999******************************************* PP

                                                  GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                                                           ++aV ++++lh++ +++  le     ++++v+s++P ++vv+e e++hns+ F+ rf
  augustus_masked-scaffold15621-abinit-gene-0.0-mRNA-1 399 TVAVFCHYALHSMISQQYRLEC----IMEVVRSINPCILVVTEAEVNHNSPAFVSRF 451
                                                           **************88888888....******************************* PP

                                                  GRAS 258 lealeyysalfdsleaklpreseerikvErellg 291
                                                           +e+l + +a fd+le+ + +++++r+ +E e+++
  augustus_masked-scaffold15621-abinit-gene-0.0-mRNA-1 452 VETLFFNTAYFDCLETFMKENESHRMILESECFE 485
                                                           ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.311196550IPR005202Transcription factor GRAS
PfamPF035146.9E-30345485IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MANKLFAFEE FGFNGIEDDF SSSNKGWETK KEVNSVKQLN FNGAEDYVES WGIDSLCSDL  60
GFYQGDSAEE GFLFSKHQRQ AQQHESFSDY GLVDDMQFDI VSPPLQTCLD EIAKLGGFPT  120
LPDVEFQKEK PYAFSLAPLK LLNNYGNGLK WLNGNRMIEP SNHMPCAKVE GQKFSTEEIM  180
RKAGEKFIHS FSQTADGLSI FSHPFGFSFY GLSNEETKDV ELAEFLFTAA EKVACQQFDR  240
ASKLLNRCDQ WSSNTGNPVQ RLVYYFSKAL RRRIDRETGR ITLKGLGKSF DLHEALMRPD  300
PAIFTFHERT PFSQVQQFAG IQAIVENVAG ARKIHIIDFS IQSGITAVGI TSKHLIEETG  360
KQLASVAQTM NLTFSFKVLM VSDMLDLKED LFELDANETV AVFCHYALHS MISQQYRLEC  420
IMEVVRSINP CILVVTEAEV NHNSPAFVSR FVETLFFNTA YFDCLETFMK ENESHRMILE  480
SECFELRMSS LYQANLVVQK FDCKGFCMLD MNAKSLIIGW KGICSPEGTL STKLHSLQVN  540
HGPATPSIAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-1725248833292GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811563.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A2N9H6140.0A0A2N9H614_FAGSY; Uncharacterized protein
STRINGXP_008223345.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.19e-29RGA-like protein 3