PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold15282-abinit-gene-0.2-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | LBD | ||||||||
Protein Properties | Length: 204aa MW: 22842.8 Da PI: 5.9296 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.8 | 9e-39 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeereda 57 aCaaC+++rrkCakdC+lap fp +++k+f n+hklFG+sn++k++++l+ +++++a augustus_masked-scaffold15282-abinit-gene-0.2-mRNA-1 14 ACAACRYQRRKCAKDCPLAPFFPPHRQKDFLNAHKLFGVSNIVKTIRDLNSDQKKIA 70 7******************************************************** PP DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 m+s+v+eA+ara+dPvyG++ ++++lq+q++ kae +l+ ++ augustus_masked-scaffold15282-abinit-gene-0.2-mRNA-1 71 MNSIVFEANARANDPVYGCCPIMWELQRQYMYFKAEYDLVLKQ 113 ***********************************99887665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 15 | No hit | No description |
PROSITE profile | PS50891 | 23.452 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.0E-37 | 14 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MSDKAGNSHS GSQACAACRY QRRKCAKDCP LAPFFPPHRQ KDFLNAHKLF GVSNIVKTIR 60 DLNSDQKKIA MNSIVFEANA RANDPVYGCC PIMWELQRQY MYFKAEYDLV LKQLSILHAQ 120 MAGPSTFASN IDVNTSDVSY SQLQHKQQLS EVDVSPFLEF GDEKEAVGFV ANDSTHGKQP 180 LEDVSEDIKP LLIFDDINDS TQCG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-26 | 5 | 114 | 2 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-26 | 5 | 114 | 2 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023899445.1 | 1e-121 | LOB domain-containing protein 22-like, partial | ||||
Swissprot | Q9LRW1 | 2e-37 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | A0A2N9HHV1 | 1e-64 | A0A2N9HHV1_FAGSY; Uncharacterized protein | ||||
STRING | EOY29909 | 1e-46 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4133 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-39 | LOB domain-containing protein 22 |
Publications ? help Back to Top | |||
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