PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold14943-abinit-gene-0.0-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | LBD | ||||||||
Protein Properties | Length: 99aa MW: 10854.3 Da PI: 6.2305 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 50.3 | 7e-16 | 13 | 52 | 9 | 48 |
DUF260 9 rrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48 rr+CakdC++apyfp+++p+kfa+++k+FGa nv+k+ + augustus_masked-scaffold14943-abinit-gene-0.0-mRNA-1 13 RRQCAKDCIFAPYFPSDDPHKFAIINKVFGAGNVSKMSTL 52 89**********************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 11.45 | 4 | 99 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-13 | 13 | 57 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
MGRDLMAVPP EWRRQCAKDC IFAPYFPSDD PHKFAIINKV FGAGNVSKMS TLSDSSSEIL 60 AAAFLDLKPN LSNEQQSSGD NAHLGHLMTT SPMTKQVEI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016721547.1 | 4e-19 | PREDICTED: LOB domain-containing protein 12-like | ||||
TrEMBL | A0A1U8M421 | 9e-18 | A0A1U8M421_GOSHI; LOB domain-containing protein 12-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 3e-20 | LBD family protein |