PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold14886-abinit-gene-0.2-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | ERF | ||||||||
Protein Properties | Length: 218aa MW: 24349.7 Da PI: 8.2155 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.6e-18 | 60 | 110 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr +k + +Wv+e+r+p +k+ r++lg+f tae+Aa+a++ a+ +l+g augustus_masked-scaffold14886-abinit-gene-0.2-mRNA-1 60 PVYRGVRKKK-SRKWVCEVREP---NKKSRIWLGTFPTAEMAARAHDVAAIALRG 110 68****9666.8******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.7E-13 | 60 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.654 | 61 | 118 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-20 | 61 | 120 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.6E-31 | 61 | 120 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-29 | 61 | 124 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.25E-29 | 62 | 120 | No hit | No description |
PRINTS | PR00367 | 1.3E-7 | 62 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-7 | 84 | 100 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MDALRHFSDP QYLTGSDISS SGSESDNTRM VNLSYEKVML ASKNPKKRAG RKKFKETRHP 60 VYRGVRKKKS RKWVCEVREP NKKSRIWLGT FPTAEMAARA HDVAAIALRG RNACLNFADS 120 VWRLSVPASV AAKDIQRAAL EAAEAFRPTE LDAAAVTVAA EAEIEPEGVF FMDEEVVFDM 180 PGLLRNMAEG MLLPPPPHWY GGDNMETDSE VSLWSYSI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 50 | 68 | RKKFKETRHPVYRGVRKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023897366.1 | 1e-124 | dehydration-responsive element-binding protein 1A-like | ||||
Swissprot | Q9FJ93 | 4e-73 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A2I4FGE6 | 8e-95 | A0A2I4FGE6_JUGRE; dehydration-responsive element-binding protein 1D | ||||
STRING | EMJ19511 | 2e-88 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25490.1 | 3e-73 | C-repeat/DRE binding factor 1 |
Publications ? help Back to Top | |||
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