PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold13487-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NF-X1
Protein Properties Length: 1118aa    MW: 121364 Da    PI: 7.9718
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold13487-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.45.3e-07429446118
                                              zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                                                           CG+H C + CH G+CppC
  augustus_masked-scaffold13487-abinit-gene-0.0-mRNA-1 429 CGMHYCTESCHAGDCPPC 446
                                                           ****************** PP
2zf-NF-X118.25.5e-06524542119
                                              zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                                                           CG H+Cq+lCH G Cp+C 
  augustus_masked-scaffold13487-abinit-gene-0.0-mRNA-1 524 CGLHSCQSLCHSGHCPSCL 542
                                                           ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578502.12E-6131201No hitNo description
PROSITE profilePS500168.769138199IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.214141197IPR001841Zinc finger, RING-type
PROSITE patternPS013590141196IPR019786Zinc finger, PHD-type, conserved site
CDDcd060086.00E-6230290No hitNo description
SMARTSM004380.039252270IPR000967Zinc finger, NF-X1-type
PfamPF014221.8254269IPR000967Zinc finger, NF-X1-type
CDDcd060085.62E-11297345No hitNo description
SMARTSM004380.001307326IPR000967Zinc finger, NF-X1-type
PfamPF014220.0063309324IPR000967Zinc finger, NF-X1-type
CDDcd060085.74E-8361404No hitNo description
PfamPF014220.074371388IPR000967Zinc finger, NF-X1-type
SMARTSM004380.11371390IPR000967Zinc finger, NF-X1-type
CDDcd060081.18E-12419467No hitNo description
PfamPF014221.2E-5429446IPR000967Zinc finger, NF-X1-type
SMARTSM004385.3E-5429448IPR000967Zinc finger, NF-X1-type
PfamPF0142218486497IPR000967Zinc finger, NF-X1-type
SMARTSM0043891486516IPR000967Zinc finger, NF-X1-type
CDDcd060083.47E-8514566No hitNo description
PfamPF014221.6E-4524541IPR000967Zinc finger, NF-X1-type
SMARTSM004382.2E-4524543IPR000967Zinc finger, NF-X1-type
CDDcd060081.28E-5571619No hitNo description
PfamPF014225.9581598IPR000967Zinc finger, NF-X1-type
SMARTSM004380.018581599IPR000967Zinc finger, NF-X1-type
PfamPF014220.14634649IPR000967Zinc finger, NF-X1-type
SMARTSM004385.9634664IPR000967Zinc finger, NF-X1-type
CDDcd060081.11E-4662711No hitNo description
PfamPF0142220666692IPR000967Zinc finger, NF-X1-type
SMARTSM004380.93673694IPR000967Zinc finger, NF-X1-type
PfamPF014244.2E-5804868IPR001374R3H domain
Gene3DG3DSA:3.30.70.3305.4E-4915961IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1118 aa     Download sequence    Send to blast
MSSQAPNDRR DHRTRFPAQA ARHQWIPRGS TATTVVNQSQ NQNQNLNPNP SPIPIPILNP  60
NPPLRFSSNY RIGGDLNSSS ASPDSRAGGS NLPRGRGYVG YRPLNQRKDR ESQVGKGLKD  120
LNLPQLVQEI QEKLTKGTVE CMICYDMVRR SAPIWSCSSC YSIFHLVCIK KWARAPTSVD  180
LSAEKSQGFN WRCPGCQSVQ LTSLKEIRYI CFCGKRPDPP SDLYLTPHSC GEPCGKPLER  240
ELGAGEGEED TCPHNCVLQC HPGPCPPCKA FAPPRLCPCG KKTITTRCSD RKSVLTCGQR  300
CDKLLECKRH RCERTCHVGS CDPCQVSVNA SCFCKKKMEV VLCGDMSVKG EVKTEEGLFS  360
CNSTCGNKLT CGNHACCEVC HPGSCGECDL MPSRVNTCYC GKTSLQEERQ SCLDPIPTCS  420
KNCGKRLPCG MHYCTESCHA GDCPPCLVRI SQKCRCGSTS RNVECYKTVI EEKFTCDKPC  480
GRKKNCGRHR CSERCCPLSN SNSFLPGDWD PHTCSIPCGK KLRCGLHSCQ SLCHSGHCPS  540
CLETIFTDLS CACGRTSTPP PLPCGTPHPS CQLPCSVPQP CGHSSSHSCH FGDCPPCTVP  600
IAKECIGGHV VLRNIPCGSK DIRCNNLCGK TRQCGMHACG RTCHAPPCDT SPGPEPGLKT  660
SCGQTCGAPR RDCRHTCKSP CHPSSLCPDE KCDFPVTITC SCGRITTTVP CDAGGNIGGF  720
SADTLYEASI IQKLPVSLQP VEASGKKIPL GQRKLVCDDE CAKLERKRVL ADAFDVNSNL  780
DALHFGENSA VSEMLTDLYR RDPKWVLSVE ERCKFLVLGK SRGTTSSLKV HVFCPMLKDK  840
RDAVRLIADR WKLAIYSAGW EPKRFIVVHV TPKSKPPPRV IGVKGSTNIN TPHPPAFDPL  900
VDMDPRLVVS FLDLPRDADI SALVLRFGGE CELVWLNDKN ALAVFSDPAR AGTAMRRLDH  960
GSVYHGAVVV IPNGGAVAAS SATSAWGGAS TAKEGGLLAA MKGNPWKKVV VQEPGWKEDL  1020
WGDDEWPGDS ADLLASAWKK EAPIAATLNR WSVLDSETSL SSSAAPLRIE DPGKQTASHS  1080
GPVLESDASG SNSAGQHQDN FSGTEMSEVV DDWEKAYE
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023892299.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A2N9IGY00.0A0A2N9IGY0_FAGSY; Uncharacterized protein
STRINGXP_008240286.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1