PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold13176-abinit-gene-0.0-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | LBD | ||||||||
Protein Properties | Length: 152aa MW: 17476.1 Da PI: 8.7936 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 114.7 | 6e-36 | 8 | 103 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeereda 57 aCaaCk++rrkCa+dC+lap fpae+ ++f+++h+lFG+sn++k+lk +++ +re+a augustus_masked-scaffold13176-abinit-gene-0.0-mRNA-1 8 ACAACKYQRRKCANDCPLAPFFPAEEFESFQYAHRLFGVSNIMKILKPVHPADREKA 64 7******************************************************** PP DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelal 96 ++s+ ye+e+++ P G++g++++lq +++++ el++ augustus_masked-scaffold13176-abinit-gene-0.0-mRNA-1 65 TRSVKYESEMWTTFPNTGCYGIVQQLQLRIQEATGELQS 103 *******************************99988875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.357 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-34 | 8 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MTLTTKSACA ACKYQRRKCA NDCPLAPFFP AEEFESFQYA HRLFGVSNIM KILKPVHPAD 60 REKATRSVKY ESEMWTTFPN TGCYGIVQQL QLRIQEATGE LQSLLPDIVR IYMDRIKKHH 120 SPPSQLPLGI TYFKSQCQHQ QKVAEDYIST SQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-21 | 2 | 110 | 5 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-21 | 2 | 110 | 5 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023885477.1 | 3e-86 | LOB domain-containing protein 22-like | ||||
TrEMBL | A0A498J2U5 | 1e-36 | A0A498J2U5_MALDO; Uncharacterized protein | ||||
STRING | XP_008348215.1 | 2e-37 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4415 | 29 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 4e-27 | LOB domain-containing protein 22 |