PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold11955-abinit-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 303aa    MW: 33178.1 Da    PI: 7.5034
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold11955-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.3e-20144194255
                                                   AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                           +y+GVr+++ +g+++AeIrdp   + k  r++lg+f+ta +Aaka+++a+ kl+g
  augustus_masked-scaffold11955-abinit-gene-0.3-mRNA-1 144 HYRGVRRRP-WGKFAAEIRDP---NrKGSRVWLGTFDTAIDAAKAYDRAAFKLRG 194
                                                           8********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.38E-31143202No hitNo description
Gene3DG3DSA:3.30.730.102.1E-32143204IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23144203IPR016177DNA-binding domain
PfamPF008478.3E-14144194IPR001471AP2/ERF domain
SMARTSM003803.3E-38144208IPR001471AP2/ERF domain
PROSITE profilePS5103224.447144202IPR001471AP2/ERF domain
PRINTSPR003671.0E-13145156IPR001471AP2/ERF domain
PRINTSPR003671.0E-13184204IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MASIDESSTL ELIREHLLND FASMESFITN LNHSISNNIS QSQSNQIAST NTDIEISDYL  60
LPKEEPINTD PSNYSNLETK PTNPQSSKPP KGPKPSNLSH RRPSLNVAIP PPTTTTFVGL  120
NSSQPMLVTA SKLNASDSNN ESKHYRGVRR RPWGKFAAEI RDPNRKGSRV WLGTFDTAID  180
AAKAYDRAAF KLRGSKAILN FPQEAGNSSS ECDVADTAEV CTGKKRNREC ESEERKEMKK  240
EKVIMAESVS LSSSSSSSSS VCPLTPSSWT GVWDFDGKGI FSVPPLSPLS PHPLMGYSQL  300
LVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-31143202160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023922390.11e-170ethylene-responsive transcription factor ERF105-like
TrEMBLA0A2I4FVZ81e-111A0A2I4FVZ8_JUGRE; ethylene-responsive transcription factor ERF105-like
STRINGXP_008234445.14e-87(Prunus mume)
STRINGEMJ199053e-87(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-30ethylene responsive element binding factor 5