PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold11225-abinit-gene-0.0-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | WOX | ||||||||
Protein Properties | Length: 200aa MW: 22950.3 Da PI: 6.8058 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.8 | 5.9e-21 | 22 | 82 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRake 55 r+R+++t+eql++Le++Fe+ n +p+ ++++e++++l +++e++V++WFqNrRa+ augustus_masked-scaffold11225-abinit-gene-0.0-mRNA-1 22 RQRWSPTTEQLQILERFFEEdNGTPNNQRIKEITTELaqhgKISESNVYNWFQNRRARL 80 79*****************99*************************************9 PP HC CS Homeobox 56 kk 57 ++ augustus_masked-scaffold11225-abinit-gene-0.0-mRNA-1 81 RR 82 97 PP | |||||||
2 | Wus_type_Homeobox | 91.4 | 8.4e-30 | 22 | 84 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRe 61 r+RW+Pt+eQ++iLe+ +++ tPn+++i++it+eL+++Gki++ NV++WFQNr+aR augustus_masked-scaffold11225-abinit-gene-0.0-mRNA-1 22 RQRWSPTTEQLQILERFFEEDNGTPNNQRIKEITTELAQHGKISESNVYNWFQNRRARL 80 79********************************************************* PP Wus_type_Homeobox 62 rqkq 65 r+kq augustus_masked-scaffold11225-abinit-gene-0.0-mRNA-1 81 RRKQ 84 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-16 | 16 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.645 | 18 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.6E-13 | 20 | 87 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-17 | 21 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.51E-13 | 22 | 84 | No hit | No description |
Pfam | PF00046 | 1.3E-18 | 22 | 82 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MRQGSLYYDA WIASSGQKMN IRQRWSPTTE QLQILERFFE EDNGTPNNQR IKEITTELAQ 60 HGKISESNVY NWFQNRRARL RRKQSVPEPQ KPESETAKEV QSLKEKKMRP ESTLSYENSA 120 QRSKTIHLQQ GPETSTEILR LNSRSNEGEP TFPSDSDLSF SGSLGHMSFV PTPGTNRFGE 180 MEVPGNYNPY CYGEGYDMAG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023908230.1 | 1e-141 | WUSCHEL-related homeobox 8-like | ||||
TrEMBL | A0A2N9HA52 | 1e-103 | A0A2N9HA52_FAGSY; Uncharacterized protein | ||||
STRING | VIT_18s0122g01140.t01 | 6e-63 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 3e-36 | WUSCHEL related homeobox 13 |