PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold10814-abinit-gene-0.2-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | C2H2 | ||||||||
Protein Properties | Length: 170aa MW: 19084.4 Da PI: 10.3268 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0014 | 41 | 63 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H augustus_masked-scaffold10814-abinit-gene-0.2-mRNA-1 41 FECKTCNRQFPSFQALGGHRASH 63 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00084 | 89 | 111 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F L H+r+H augustus_masked-scaffold10814-abinit-gene-0.2-mRNA-1 89 HECSICGLEFAMGQALGGHMRRH 111 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 4.1E-13 | 40 | 65 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.66E-8 | 40 | 111 | No hit | No description |
SMART | SM00355 | 0.16 | 41 | 63 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.91 | 41 | 68 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 43 | 63 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.22 | 89 | 111 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.141 | 89 | 111 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.3E-10 | 89 | 112 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 91 | 111 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0071289 | Biological Process | cellular response to nickel ion | ||||
GO:2000280 | Biological Process | regulation of root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MTMKRMREDG GIESLDMANC LMLLSRSLKT MPRKASRADV FECKTCNRQF PSFQALGGHR 60 ASHKRPKLTG EELKEHTKTQ NLGNKPKMHE CSICGLEFAM GQALGGHMRR HRVTMDGSFS 120 SATIEKKVPV LKRSNSTSVM CLDLNLTPLE NDLKLLFGKK APQIDFTLMV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023921570.1 | 1e-112 | zinc finger protein ZAT11-like | ||||
Swissprot | Q9SLD4 | 6e-45 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A2N9EGY9 | 1e-100 | A0A2N9EGY9_FAGSY; Uncharacterized protein | ||||
STRING | Gorai.006G176000.1 | 4e-72 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 2e-47 | C2H2 family protein |