PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold08495-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 317aa    MW: 34319.6 Da    PI: 4.0952
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold08495-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-1761111155
                                                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                                           + y+GVr++  +g+WvAeIr+p   + r kr +lg+f  a +Aa a+++a++ ++g
  augustus_masked-scaffold08495-abinit-gene-0.0-mRNA-1  61 CNYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGTFENAVDAASAYDEAARVMYG 111
                                                           56*****999.**********8...3.35**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-1061111IPR001471AP2/ERF domain
CDDcd000184.68E-3161121No hitNo description
SuperFamilySSF541712.62E-2162121IPR016177DNA-binding domain
PROSITE profilePS5103221.28562119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-3162121IPR001471AP2/ERF domain
SMARTSM003801.2E-3362125IPR001471AP2/ERF domain
PRINTSPR003675.9E-96374IPR001471AP2/ERF domain
PRINTSPR003675.9E-985101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MESSKKRKRK GDGVSVAETL AKWRDYNAQV ESSAKRARKL PALGTKKGCM KGKGGPENLH  60
CNYRGVRQRT WGKWVAEIRE PNRGKRLWLG TFENAVDAAS AYDEAARVMY GAYARLNFPE  120
SVSTISGPTP GESEVSADES TAMPSTIEST AMPTTSCLVE DESGIASYSM DSGLDHFLGC  180
SENEFIDVQE LMALLDNDPL GFTDSELGFG YDGDQLGFPA MPSTSNLAEI ETNESTAMPT  240
TSSLVEDEST SYSENEHFDV QELMALLDND PLGFTDSELS FGYNGDQPGL PFTEAAVPST  300
SNLAETESNE PTGVDSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1862122263ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
149KKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023900832.11e-125dehydration-responsive element-binding protein 2A-like
TrEMBLA0A2N9GRQ38e-72A0A2N9GRQ3_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.25e-38DRE-binding protein 2A