PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold08235-abinit-gene-0.0-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

SRS

Protein Properties

Length: 207aa MW: 23210.2 Da PI: 8.9472

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold08235-abinit-gene-0.0-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	179.1	1.9e-55	8	143	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaa 59 +gt++CqdCGnqakk+C+++RCRtCCk++gf+C+thvkstW+p ++rr+rqq+++++ augustus_masked-scaffold08235-abinit-gene-0.0-mRNA-1 8 MGTSRCQDCGNQAKKECVYMRCRTCCKNKGFQCETHVKSTWIPLYRRRQRQQHQQQQ 64 6899********************************************8877664 PP DUF702 60 sska.aasaaeaaskrkrelkskkqsalsstklssaeskkeletsslPeevsseavf 115 + ++ + +++kr+r +s + +e +++P+ev+s+a f augustus_masked-scaffold08235-abinit-gene-0.0-mRNA-1 65 LAAVlPQELQGHSPKRHRPI-------------HS----SGSEEAKFPAEVQSMATF 104 33320222233333333322.............22....2345678******* PP DUF702 116 rcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 rc+rvss+dd+++e+a+qtav+igGhvf+G+LydqGle+ augustus_masked-scaffold08235-abinit-gene-0.0-mRNA-1 105 RCIRVSSMDDADDEYAFQTAVTIGGHVFRGVLYDQGLES 143 **********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.8E-56	10	142	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.6E-27	13	54	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.9E-25	93	141	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MRQQGGLMGT SRCQDCGNQA KKECVYMRCR TCCKNKGFQC ETHVKSTWIP LYRRRQRQQH 60 QQQQLAAVLP QELQGHSPKR HRPIHSSGSE EAKFPAEVQS MATFRCIRVS SMDDADDEYA 120 FQTAVTIGGH VFRGVLYDQG LESRHTSTVG ESSSSRAHQQ PNNLLNAATL ATLTSDSAST 180 EPFLPPSYPF SLNAFMPGMQ FLPRPKT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023915474.1	1e-138	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9SD40	5e-55	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A2N9GP69	1e-104	A0A2N9GP69_FAGSY; Uncharacterized protein
STRING	POPTR_0009s12450.1	1e-73	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9969	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	9e-48	SHI-related sequence3

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]