PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold07671-abinit-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family M-type_MADS
Protein Properties Length: 406aa    MW: 43669.2 Da    PI: 8.1883
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold07671-abinit-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF451.4e-141153345
                                                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                                                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                                                          i n+s r+ +f kRr g+lKK +EL +LC++++ v+i++++++
  augustus_masked-scaffold07671-abinit-gene-0.5-mRNA-1 11 IVNDSARKASFKKRRVGLLKKVSELTTLCGVNAFVVIYGPDNE 53
                                                          6799************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.063153IPR002100Transcription factor, MADS-box
CDDcd002662.25E-28285No hitNo description
SuperFamilySSF554551.22E-22294IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-6323IPR002100Transcription factor, MADS-box
PfamPF003196.6E-151153IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MTRKKVKLMW IVNDSARKAS FKKRRVGLLK KVSELTTLCG VNAFVVIYGP DNEEPAAWPS  60
RQVVQQLLTR FQGVPEMERH KKMMNQETYL RERATKTQEQ LRKQQRKNKE MEMGHLMHQV  120
DQGKGLAELE LCEMTGLAWM LEEKIKENRK RMDYFQQVSG APGSMPRPPP DTDDIGRAGG  180
STGADQGRAP TESYMWEPWF VEMISQHEKK AAASNSSVRS DMGLPPNSYI GGPSGASDMV  240
PIPYGNYGGT GGGIEVGLPY GNFIGASSTG GSEMGVLPYG NYGVNSGVNV NDHMELPHGN  300
YGATGGGGNN MGMGFPYHGN MRGGAGGGDM GVGMMPHGGN IGSVGGGSDM GLPGYYGGGS  360
TGPGSDAGLP YDVTKSWQQR SITGPGSDAG LPYDVTKPWQ AHFFNP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLMWIVNDSARKASFKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023900669.10.0pro-resilin-like
TrEMBLA0A2N9IQ891e-170A0A2N9IQ89_FAGSY; Uncharacterized protein
STRINGEOY085102e-98(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110141938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-38AGAMOUS-like 80