PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold07671-abinit-gene-0.5-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 406aa MW: 43669.2 Da PI: 8.1883 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45 | 1.4e-14 | 11 | 53 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i n+s r+ +f kRr g+lKK +EL +LC++++ v+i++++++ augustus_masked-scaffold07671-abinit-gene-0.5-mRNA-1 11 IVNDSARKASFKKRRVGLLKKVSELTTLCGVNAFVVIYGPDNE 53 6799************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-18 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.063 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.25E-28 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.22E-22 | 2 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-6 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.6E-15 | 11 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-6 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MTRKKVKLMW IVNDSARKAS FKKRRVGLLK KVSELTTLCG VNAFVVIYGP DNEEPAAWPS 60 RQVVQQLLTR FQGVPEMERH KKMMNQETYL RERATKTQEQ LRKQQRKNKE MEMGHLMHQV 120 DQGKGLAELE LCEMTGLAWM LEEKIKENRK RMDYFQQVSG APGSMPRPPP DTDDIGRAGG 180 STGADQGRAP TESYMWEPWF VEMISQHEKK AAASNSSVRS DMGLPPNSYI GGPSGASDMV 240 PIPYGNYGGT GGGIEVGLPY GNFIGASSTG GSEMGVLPYG NYGVNSGVNV NDHMELPHGN 300 YGATGGGGNN MGMGFPYHGN MRGGAGGGDM GVGMMPHGGN IGSVGGGSDM GLPGYYGGGS 360 TGPGSDAGLP YDVTKSWQQR SITGPGSDAG LPYDVTKPWQ AHFFNP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLMWIVNDSARKASFKKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023900669.1 | 0.0 | pro-resilin-like | ||||
TrEMBL | A0A2N9IQ89 | 1e-170 | A0A2N9IQ89_FAGSY; Uncharacterized protein | ||||
STRING | EOY08510 | 2e-98 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11014 | 19 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-38 | AGAMOUS-like 80 |