PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold07507-abinit-gene-0.2-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Dof

Protein Properties

Length: 340aa MW: 36492.3 Da PI: 8.4771

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold07507-abinit-gene-0.2-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.8	6.4e-40	32	92	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +e+ lkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk augustus_masked-scaffold07507-abinit-gene-0.2-mRNA-1 32 PEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKK 90 67899*****************************************************9 PP zf-Dof 61 ss 62 ++ augustus_masked-scaffold07507-abinit-gene-0.2-mRNA-1 91 VK 92 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.4E-33	34	90	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-26	35	90	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.432	36	90	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	38	74	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010052	Biological Process	guard cell differentiation
GO:0010118	Biological Process	stomatal movement
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1902066	Biological Process	regulation of cell wall pectin metabolic process
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MMSQDNIPAK PVTKDENQGS AGSRKTAAAR PPEQGLKCPR CDSPNTKFCY YNNYSLTQPR 60 HFCKTCRRYW TKGGALRNVP IGGGCRKNKK VKSSSRLSCD SKDSGSSSSE IGGLKFFHGL 120 SPTAMDFQLG GLSFPRLHHP PTTGVYNQFS SFGLGDVSAT LASGSVTSPC FALDPSGTSN 180 SLMGFNYPNN SGVGFSAPAQ NTSTLNVHSS LASSIESLSS INQDLHWKLQ QQRLAMLFGG 240 DTHKDNSVSS VPLENHAQKP QPIVFQNLEI SKPEACGVEN SRKEGGTSGD TPTEWFFGNS 300 YGSVTPTPTD SESNRGNDNA SNWNGIQAWG GDLQQYSALP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023887412.1	0.0	dof zinc finger protein DOF5.7
TrEMBL	A0A2N9J327	0.0	A0A2N9J327_FAGSY; Uncharacterized protein
STRING	EOX91892	1e-164	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3854	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	3e-65	Dof family protein