PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | augustus_masked-scaffold07426-abinit-gene-0.0-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 256aa MW: 28422.5 Da PI: 6.2424 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6.1e-05 | 55 | 77 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H augustus_masked-scaffold07426-abinit-gene-0.0-mRNA-1 55 YTCSFCNREFRSAQALGGHMNIH 77 9********************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.99E-7 | 52 | 81 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.3E-4 | 53 | 79 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0019 | 55 | 77 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 7.3E-7 | 55 | 78 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.51 | 55 | 82 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 57 | 77 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MEQAPYWMCT RRKQVLQSHF PPSMNSFNSS SWEEKAFAED SAGTLGGCVW PPRSYTCSFC 60 NREFRSAQAL GGHMNIHRRD RARLKQSLSP SNEPLHKSLE GQFSTEINSK LSHNLVSKSC 120 PSEYTFKSAY SCSSSVQSWS NPVRVGLLSI SEPNPEVGKN QRDQEDSVGL GYDGDYVETD 180 LSVGMNSFVS QNRPTGSCGD EAASCKKPRT AVSSLSFVLK PFSDDRYHLQ SEVIEVLNPS 240 TMEGLDLELR LGDTPN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 6e-13 | 50 | 77 | 2 | 29 | superman protein |
2l1o_A | 6e-13 | 50 | 77 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023883810.1 | 1e-169 | transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A2N9FDQ6 | 1e-114 | A0A2N9FDQ6_FAGSY; Uncharacterized protein | ||||
STRING | VIT_13s0019g02120.t01 | 7e-71 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1776 | 30 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06070.1 | 6e-28 | C2H2 family protein |