PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold06584-abinit-gene-0.2-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | WRKY | ||||||||
Protein Properties | Length: 197aa MW: 22503.6 Da PI: 9.723 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 35.8 | 1.6e-11 | 175 | 196 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK+vkg+++pr augustus_masked-scaffold06584-abinit-gene-0.2-mRNA-1 175 LDDGYRWRKYGQKVVKGNPHPR 196 59*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00916 | 1.1E-10 | 8 | 50 | IPR011547 | SLC26A/SulP transporter domain |
Gene3D | G3DSA:2.20.25.80 | 7.5E-13 | 161 | 196 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.19E-10 | 167 | 197 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.663 | 170 | 197 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-7 | 176 | 196 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008272 | Biological Process | sulfate transport | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0015116 | Molecular Function | sulfate transmembrane transporter activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MKMKKRKEGI AVGRTFATLK DYQVDGNKEM IAIGLMNVVG SSTSCYVTIS EASAPTGADP 60 IAMMEFYTKA AQEEKFKHLN NQKMKCHHQL LFKNHRRRDR ELHSYWSHAL RQQSEEEGDA 120 ETREEGGGDE PNPKRRHVPN LLLMTDAGTS EVPLSHKTIT EPKIIVQTRS GVDLLDDGYR 180 WRKYGQKVVK GNPHPRW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN675708 | 2e-43 | JN675708.1 Prunus salicina WRKY domain class transcription factor mRNA, complete cds. | |||
GenBank | KF263560 | 2e-43 | KF263560.1 Prunus avium tetraploid rootstock Y1 WRKY domain class transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | XP_004304267.1 | 3e-32 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF25024 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 4e-22 | WRKY DNA-binding protein 3 |