PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold06339-abinit-gene-0.3-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ZF-HD
Protein Properties Length: 282aa    MW: 31224.3 Da    PI: 8.2625
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold06339-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.41.5e-3272128259
                                           ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                                                           + vrY+eClkNhAas+Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+eve
  augustus_masked-scaffold06339-abinit-gene-0.3-mRNA-1  72 KVVRYRECLKNHAASMGGNATDGCGEFMPS-GEEGTIEALTCSACNCHRNFHRKEVE 127
                                                           679**************************9.999*********************98 PP

                                           ZF-HD_dimer  59 e 59 
                                                            
  augustus_masked-scaffold06339-abinit-gene-0.3-mRNA-1 128 G 128
                                                           6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257747.0E-2674132IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.6E-3074126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-3175126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.41876125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.3E-30211277IPR009057Homeodomain-like
SuperFamilySSF466891.85E-19213276IPR009057Homeodomain-like
TIGRFAMsTIGR015652.1E-27215271IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MELSSQEGEI PIPINSTYAG HGHHGHGHGH GHMIHHDPVP HNHIIPSSAP QIPSNGPPLP  60
TSLEDHVPYT KKVVRYRECL KNHAASMGGN ATDGCGEFMP SGEEGTIEAL TCSACNCHRN  120
FHRKEVEGEP SSCDCHHSPH LNRRKFIFGH PKNLLAPEAL GYPTATGTFI SSRAPPPHQM  180
IMSYNMGSLP SESDEQEDGA GNGGVVVARP TQLVKKRFRT KFTQEQKEKM LNFAEKVGWK  240
IQKQEEAVVQ QFCQEIGVKR RVLKVWMHNN KHNLAKKNPS TA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-242162731875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023904084.10.0zinc-finger homeodomain protein 4-like
SwissprotQ9M9S06e-77ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLF6HJZ61e-162F6HJZ6_VITVI; Uncharacterized protein
STRINGVIT_12s0035g01880.t011e-163(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.12e-78homeobox protein 21