PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold06152-abinit-gene-0.6-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NF-YC

Protein Properties

Length: 270aa MW: 30481.3 Da PI: 6.3037

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold06152-abinit-gene-0.6-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	178.4	6.6e-56	86	190	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelf 54 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPv+++kace+f augustus_masked-scaffold06152-abinit-gene-0.6-mRNA-1 86 QLQMFWANQmqeIEQTNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMF 142 89****988889*************************************** PP NF-YC 55 ileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdelk 102 ileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvdi+prdelk augustus_masked-scaffold06152-abinit-gene-0.6-mRNA-1 143 ILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELK 190 *******************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	6.29E-35	65	180	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.2E-37	99	172	IPR009072	Histone-fold
Pfam	PF00808	2.4E-21	108	171	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MDQSEQTQKQ QQQQQQPVVG VSTGANQMAY AAPNYQTAAM VASGTPAVAV HSPTQPPNTF 60 SNSSHQLAYQ QAQHFHHQQQ QQQQQQLQMF WANQMQEIEQ TNDFKNHSLP LARIKKIMKA 120 DEDVRMISAE APVIFAKACE MFILELTLRS WIHTEENKRR TLQKNDIAAA ISRTDVFDFL 180 VDIIPRDELK EEGLGVTKAT IPVVGSPADI PYYYVPPQHP VGPTGMIMGK PVDQAAMYVA 240 QQPRPPMAFM PWPQTQTQQQ QQSQQQQTDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	4e-58	94	186	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	164	RRTLQKN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015882049.1	1e-147	nuclear transcription factor Y subunit C-2
Refseq	XP_015882050.1	1e-147	nuclear transcription factor Y subunit C-2
Refseq	XP_015882052.1	1e-147	nuclear transcription factor Y subunit C-2
Refseq	XP_015882054.1	1e-147	nuclear transcription factor Y subunit C-2
Refseq	XP_024929310.1	1e-147	nuclear transcription factor Y subunit C-2
Refseq	XP_024929311.1	1e-147	nuclear transcription factor Y subunit C-2
TrEMBL	A0A2N9EM54	1e-151	A0A2N9EM54_FAGSY; Uncharacterized protein
STRING	EMJ12984	1e-142	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12372	28	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-82	nuclear factor Y, subunit C2