PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold05815-abinit-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 294aa    MW: 31891.6 Da    PI: 9.555
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold05815-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.8e-13103147347
                                                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                           +WT+eE+  ++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qky
  augustus_masked-scaffold05815-abinit-gene-0.3-mRNA-1 103 PWTEEEHRTFLIGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKY 147
                                                           7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.21896152IPR017930Myb domain
SuperFamilySSF466891.05E-1797153IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-1899151IPR006447Myb domain, plants
SMARTSM007172.6E-8100150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-10101146IPR009057Homeodomain-like
CDDcd001671.20E-8103148No hitNo description
PfamPF002491.8E-10103147IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGRKCSHCGN IGHNSRTCTY RETFAGGLRL FGVQLDLSSS SFALKKSFSV DCLYQPSSSS  60
PTSPSSSLSS SRISIDENSD KTTIGYLSDG LICRPQERKK GIPWTEEEHR TFLIGLEKLG  120
KGDWRGISRN YVTTRTPTQV ASHAQKYFLR QASLNKKKRR SSLFDLVGSS SNILGHPASS  180
TNSKPSDAVP AEYCKTSSSQ HDTTLPLLGH SSSQQDAKSD NQETEDPQLP SSSKANVPVW  240
LYGLIDSQLK TSHAAKPSSS NASPNLELTL AAPRPLEQNK SSPAPLLFGP ITVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155159KKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023906593.10.0transcription factor MYBS3-like isoform X2
TrEMBLA0A2N9EP741e-161A0A2N9EP74_FAGSY; Uncharacterized protein
STRINGVIT_11s0016g02410.t011e-116(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-53MYB_related family protein