PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold05722-abinit-gene-0.0-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

ZF-HD

Protein Properties

Length: 339aa MW: 36882.5 Da PI: 8.6277

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold05722-abinit-gene-0.0-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	110.4	9.5e-35	68	124	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 v+Y+eClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre++ augustus_masked-scaffold05722-abinit-gene-0.0-mRNA-1 68 VVTYRECLKNHAASLGGHALDGCGEFMPSQSATpADPTSLKCAACGCHRNFHRREPD 124 589************************99999******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	5.0E-24	69	125	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.8E-29	69	123	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.4E-31	70	122	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.348	71	122	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.19E-18	207	276	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.2E-29	210	276	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.0E-23	215	272	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MDLTPTITTT NNTTAINNTA AKSPEAESET PTRIQPSKPL SFSNGVLKRH NPHHHHHHQH 60 HFTSPQLVVT YRECLKNHAA SLGGHALDGC GEFMPSQSAT PADPTSLKCA ACGCHRNFHR 120 REPDDPIPTS QTTHVIEYQP HHRHHPPPPP QPPQSQPQLP LNRSPNSASP PPISSSYFPS 180 SAPHMLLALS GGLSAPPDTP TGHNNAILTP SPNARKRFRT KFSQDQKEKM HQFADSVGWK 240 MQKRDEELVQ EFCNKVGVDK GVLKVWMHNN KNTFGKRDVN GGGAGNSNNI LEHTHNGNNI 300 NSNGNNNSNN NSNLGENLNH YQSDSGAHGG ATNGSSSSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	3e-19	216	273	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00387	DAP	Transfer from AT3G28920	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023910531.1	1e-156	zinc-finger homeodomain protein 9-like
Swissprot	Q9LHF0	5e-82	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A2I4DYL3	1e-136	A0A2I4DYL3_JUGRE; zinc-finger homeodomain protein 10-like
STRING	evm.model.supercontig_140.55	1e-109	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1979	31	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	2e-80	homeobox protein 34

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]