PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold04800-abinit-gene-0.0-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NF-YB | ||||||||
Protein Properties | Length: 201aa MW: 22922.6 Da PI: 6.6315 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 181.1 | 9.4e-57 | 33 | 128 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrek 58 +eqdrflPianv+rimkkv+Pan+kiskdaketvqecvsefisfvt+easdkcqrek augustus_masked-scaffold04800-abinit-gene-0.0-mRNA-1 33 KEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREK 89 89******************************************************* PP NF-YB 59 rktingddllwalatlGfedyveplkvylkkyrelegek 97 rktingdd++wa++tlGfedyv plk+yl+kyre+egek augustus_masked-scaffold04800-abinit-gene-0.0-mRNA-1 90 RKTINGDDIIWAITTLGFEDYVTPLKTYLQKYREIEGEK 128 ************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.3E-53 | 28 | 150 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 6.79E-41 | 35 | 152 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.5E-28 | 38 | 102 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.2E-19 | 66 | 84 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 69 | 85 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.2E-19 | 85 | 103 | No hit | No description |
PRINTS | PR00615 | 1.2E-19 | 104 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MEDESHGYGS HGPSVGSPES PRLKNSTSSS HNKEQDRFLP IANVGRIMKK VIPANGKISK 60 DAKETVQECV SEFISFVTGE ASDKCQREKR KTINGDDIIW AITTLGFEDY VTPLKTYLQK 120 YREIEGEKLN IPKQQRSEQR LHQHQHEQEQ NIPYNTLYTS TSLMPQPSFM ATDQPFPLPF 180 STNSIQKQLQ PQDQMDSVGH W |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_B | 7e-45 | 33 | 123 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 7e-45 | 33 | 123 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023919153.1 | 1e-147 | nuclear transcription factor Y subunit B-7 | ||||
Swissprot | Q9SIT9 | 2e-71 | NFYB7_ARATH; Nuclear transcription factor Y subunit B-7 | ||||
TrEMBL | A0A1Q3BA57 | 1e-105 | A0A1Q3BA57_CEPFO; CBFD_NFYB_HMF domain-containing protein | ||||
STRING | GLYMA05G32680.1 | 1e-104 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13249 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G13570.1 | 8e-72 | nuclear factor Y, subunit B7 |
Publications ? help Back to Top | |||
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