PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | augustus_masked-scaffold04783-abinit-gene-0.0-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 28075.2 Da PI: 5.4465 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.2 | 4.4e-19 | 14 | 59 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT++Ed l ++v+q+G+++W++I++ ++ gR++k+c++rw + augustus_masked-scaffold04783-abinit-gene-0.0-mRNA-1 14 KGSWTPQEDATLMKLVEQHGPRNWSLISQGIP-GRSGKSCRLRWCNQ 59 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 6.8e-17 | 68 | 110 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed ++ +a++ +G++ W+tIar ++ gRt++ +k++w++ augustus_masked-scaffold04783-abinit-gene-0.0-mRNA-1 68 PFTPAEDAIIFQAHAVHGNR-WATIARLLP-GRTDNAIKNHWNST 110 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.809 | 9 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.74E-31 | 12 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-15 | 13 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.5E-19 | 14 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-25 | 15 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.50E-15 | 16 | 58 | No hit | No description |
PROSITE profile | PS51294 | 25.135 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 6.8E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-14 | 68 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.64E-13 | 68 | 111 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.1E-23 | 68 | 114 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence Send to blast |
MVMKMENGGG DRIKGSWTPQ EDATLMKLVE QHGPRNWSLI SQGIPGRSGK SCRLRWCNQL 60 SPTVQHRPFT PAEDAIIFQA HAVHGNRWAT IARLLPGRTD NAIKNHWNST LRRRRGGNGS 120 ELESASSESN SVVKRSDAGS SDSDSGLKRQ RLMGGGTGGW PEENSNLVVG PQTSLTLSLP 180 GGGGGGGGES VIALPAVDEK MKVTVEEENE EEEEEEEEEE TCLVTIMQKM IAAEVRNYMD 240 TLRSKNGPGP DCGPPAQKGS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-40 | 13 | 114 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023903740.1 | 1e-145 | transcription factor MYB77-like | ||||
Swissprot | Q9SN12 | 1e-57 | MYB77_ARATH; Transcription factor MYB77 | ||||
TrEMBL | A0A2N9IWI2 | 1e-100 | A0A2N9IWI2_FAGSY; Uncharacterized protein | ||||
STRING | VIT_13s0067g01360.t01 | 8e-92 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11600 | 29 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G23290.1 | 2e-53 | myb domain protein 70 |
Publications ? help Back to Top | |||
---|---|---|---|
|