PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold04681-abinit-gene-0.0-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | ZF-HD | ||||||||
Protein Properties | Length: 177aa MW: 19592.7 Da PI: 8.2938 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 90.8 | 1.3e-28 | 10 | 59 | 5 | 57 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 Y+eCl+NhAaslG++a+DGCgEf+ + +++ +l+CaACgCHRnFHR+ + augustus_masked-scaffold04681-abinit-gene-0.0-mRNA-1 10 IYRECLRNHAASLGSYATDGCGEFTLD---DTSHGSLQCAACGCHRNFHRKVT 59 7*************************8...56789***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.1E-23 | 10 | 59 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.902 | 11 | 58 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-17 | 11 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.7E-23 | 11 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.82E-16 | 92 | 160 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-29 | 92 | 162 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.8E-28 | 102 | 160 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MQGDNNTNDI YRECLRNHAA SLGSYATDGC GEFTLDDTSH GSLQCAACGC HRNFHRKVTY 60 VPPHGRGLVL SCTSRDPSAD TTTADLMDYS GGSELGERSS SKKRFRTKFT PDQKEKMLAF 120 AEKLGWKLQR KDLEDEIERF CRGVGVSRQV FKVWMHNHKN SSSSSSASTG NASSLTQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 6e-23 | 103 | 165 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023908039.1 | 1e-130 | zinc-finger homeodomain protein 10-like | ||||
TrEMBL | A0A2N9I0P1 | 1e-107 | A0A2N9I0P1_FAGSY; Uncharacterized protein | ||||
STRING | POPTR_0012s03770.1 | 7e-83 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7982 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 9e-39 | homeobox protein 31 |