PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold04597-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 285aa    MW: 31154.8 Da    PI: 4.6782
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold04597-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-194189355
                                                   AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                                          + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  augustus_masked-scaffold04597-abinit-gene-0.0-mRNA-1 41 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 89
                                                          56******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.7054097IPR001471AP2/ERF domain
SMARTSM003801.6E-3440103IPR001471AP2/ERF domain
CDDcd000185.12E-304096No hitNo description
SuperFamilySSF541715.89E-214198IPR016177DNA-binding domain
PRINTSPR003673.6E-84152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-294197IPR001471AP2/ERF domain
PfamPF008476.4E-124389IPR001471AP2/ERF domain
PRINTSPR003673.6E-86379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDFNNNSSPA NSPSSSKSKR KAQPQQQQTP LQNQQGEALR FLGVRRRPWG RYAAEIRDPS  60
TKERHWLGTF DTAEEAALAY DRAARSMRGS KARTNFVYSD MPRGSSVTSI ISPDETHHEI  120
SPLFTPALQH QQNDTTNNTN TTAELFFTQD PFNAACPFSG WAQGNTTTLG SYQPITGIMD  180
TDTGLSHSQT YSDSTQLPPL PPDASSSFYG SGLLGSDMGQ GVWTDTNFFE FSEDSTNGLD  240
SALTGPYLGF DSNEFVQHSP LFGRVPPVPD TSTTGFDLGS SSAFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-194196359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023872407.11e-170ethylene-responsive transcription factor LEP-like
TrEMBLA0A2N9F0051e-138A0A2N9F005_FAGSY; Uncharacterized protein
STRINGEOX995731e-122(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.12e-36ERF family protein