PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold04550-abinit-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 724aa    MW: 80760.9 Da    PI: 6.7336
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold04550-abinit-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.66.6e-29772017129
                                                   NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFs 62 
                                                           F  +d el++ yLk+kv +++l+  + i ev++y++ P+ L  ++ +++e+ewyfF+
  augustus_masked-scaffold04550-abinit-gene-0.6-mRNA-1  77 FCRSDLELLTLYLKRKVLNQQLPS-NKIVEVELYNHSPEWLTgQHPQSSENEWYFFT 132
                                                           6678*******************9.77**************9667788999****** PP

                                                   NAM  63 krdkkyatgkr...knratksgyWkatgkdkevlskkgelvglkktLvfykgrapkg 116
                                                           + + k+ +++r   +n++t++g+W+a g + ++ + +g +vg kk L fykg+ pkg
  augustus_masked-scaffold04550-abinit-gene-0.6-mRNA-1 133 SVEGKNLKKSRvicQNQSTNDGFWEAFGGELQIQE-NGIVVGFKKQLNFYKGKPPKG 188
                                                           *99999988863337889***************99.99******************* PP

                                                   NAM 117 ektdWvmheyrle 129
                                                           + t+Wvm+eyrle
  augustus_masked-scaffold04550-abinit-gene-0.6-mRNA-1 189 VPTKWVMDEYRLE 201
                                                           ***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100535.89171226IPR003441NAC domain
SuperFamilySSF1019411.83E-3673226IPR003441NAC domain
PfamPF023656.2E-1576200IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MEFNDEQSKP SYQVPVTTAQ VVSNISTSIT TQLPQPLNAP TSNVISSSSP VVIDLDPDGE  60
KDNHGISFEN QDPPLGFCRS DLELLTLYLK RKVLNQQLPS NKIVEVELYN HSPEWLTGQH  120
PQSSENEWYF FTSVEGKNLK KSRVICQNQS TNDGFWEAFG GELQIQENGI VVGFKKQLNF  180
YKGKPPKGVP TKWVMDEYRL EVLPQTKRSE NGMTWDEYVL CRIYKKSDEN LSRICNNPVV  240
RPKFPPYDVQ GMHRPTEEYA NKLQAKRAND RTQMVEPIPA MFSSPNKSSR NANATQAVGY  300
YGGPPQMVGP TPRIYKKSDA NLSRIHINPV IPVLTGLHFD PIYVQKHLQL FEKYLQADRA  360
TATKRTQMVE PIPAMLSSPS KSSRDANATQ AVGYYGGPPQ MVEPTPRIYK KSDANLSRIH  420
INPVIPVLLE LHFDPVYVQK RLLFEKYLQA HRATATKRTQ MVEPIPATPS FPKSSRYAIA  480
NAIQEVGSYR SPPQMIEPIP SMLSAIKEVG YYGGPTQMVE PTPSMLSLPN ELSGHANDSQ  540
AVGNYGNPPQ MVEPTPSVLS LPNELSGHAN DSQAVGNYGN PPQMVEPIPG MPYLPSESSG  600
HANYSQVVGN YGNPPQMVEP THSMTYFPNE SSRYANNCQA GGNHGTPQIE PIPGMPSVTN  660
ESSGYVHSNF PPNELSGHQE DCNHTNPELQ FDFCGINDLA PWMNMGDILP NKHRKLSDDD  720
NRRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-247022914171Stress-induced transcription factor NAC1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205212TKRSENGM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.13e-29NAC domain containing protein 52