PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold04142-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family G2-like
Protein Properties Length: 332aa    MW: 35822.7 Da    PI: 7.0309
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold04142-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.52e-30121174155
                                               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                                           +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  augustus_masked-scaffold04142-abinit-gene-0.2-mRNA-1 121 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 174
                                                           59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.059118177IPR017930Myb domain
SuperFamilySSF466893.31E-20118178IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-30120179IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-24122174IPR006447Myb domain, plants
PfamPF002491.3E-7124173IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MREEDSNWFS RWEEELPSPE ELMPLSQTLI TPDLAMAFDI RNPNPNNSNN NNNTISNNNN  60
NNSPTHYHHQ QTGSVPVNPL GNTTTSASTP PPQPNSAEFG ADSAELGSGA AGEEPARTLK  120
RPRLVWTPQL HKRFVDAVAH LGIKNAVPKT IMQLMSVDGL TRENVASHLQ KYRLYLKRMQ  180
GVSAGGGGSG PANGAGGLAA ASADPATDHL FASSPVPPHF LHPGRPNSDH YLPFVQVAAL  240
PHHHHHHPQQ MVATVAHPQL QPPFHRQVGH FGSPPNGQFE HPFLSTRQSQ PVHRMAAPLH  300
NQGPGGGYGE DLELANGAGG RKVLTLFPTG DD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-31121177157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023892415.11e-174transcription factor MYBC1-like
SwissprotO222101e-64MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A2N9FPH41e-150A0A2N9FPH4_FAGSY; Uncharacterized protein
STRINGXP_010036386.11e-136(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85423045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.19e-95G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]