PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold04136-abinit-gene-0.0-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Dof

Protein Properties

Length: 313aa MW: 34762.4 Da PI: 9.5916

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold04136-abinit-gene-0.0-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	113.7	8.2e-36	49	109	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 +++ lkcprC+stntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPvGggr+++ augustus_masked-scaffold04136-abinit-gene-0.0-mRNA-1 49 QTDPLKCPRCESTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNK 105 56789************************************************9888 PP zf-Dof 59 kkss 62 ++++ augustus_masked-scaffold04136-abinit-gene-0.0-mRNA-1 106 RHKK 109 8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-21	50	106	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-31	52	106	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.475	53	107	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	55	91	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MGLSSKQVSS DGVDWSQTLL QTQSLELPKP PPMRRQQQQQ QQQQNQQQQT DPLKCPRCES 60 TNTKFCYYNN YNKSQPRHFC RACKRHWTKG GTLRNVPVGG GRKNKRHKKS ATAASASTST 120 SAANAATTNS TNTNINNRLA AHMAIEAQQQ RQNLPALSLG DQKCISEILY RSLIRSPSSM 180 PHQNLINSSN NMDSKNFSSN SNIHLGSTLP LSSGQSLHFP FSSSSSFNTN PSSISSSLHS 240 SSVYNYTEGF KTIEEPTISS IMANTSTSAP QPWQLPTTRS SSMDMTTYWN WDDIDTFAST 300 DLNLPWDDSD IKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023924062.1	1e-167	dof zinc finger protein DOF1.4-like isoform X1
TrEMBL	A0A2N9J2T4	1e-132	A0A2N9J2T4_FAGSY; Uncharacterized protein
STRING	cassava4.1_034118m	1e-120	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	2e-28	Dof family protein