PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold03567-abinit-gene-0.2-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family M-type_MADS
Protein Properties Length: 61aa    MW: 6956.1 Da    PI: 10.3635
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold03567-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF101.43.3e-32958150
                                                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                                                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                                          +rienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gkl+e+ 
  augustus_masked-scaffold03567-abinit-gene-0.2-mRNA-1  9 ERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSHGKLFEFG 58
                                                          69**********************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.763161IPR002100Transcription factor, MADS-box
SMARTSM004327.5E-40160IPR002100Transcription factor, MADS-box
CDDcd002653.42E-37260No hitNo description
SuperFamilySSF554551.05E-29260IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.4E-281057IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-323859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
MGRGRVVLER IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS HGKLFEFGST  60
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-22161161MEF2C
5f28_B1e-22161161MEF2C
5f28_C1e-22161161MEF2C
5f28_D1e-22161161MEF2C
6byy_A1e-22161161MEF2 CHIMERA
6byy_B1e-22161161MEF2 CHIMERA
6byy_C1e-22161161MEF2 CHIMERA
6byy_D1e-22161161MEF2 CHIMERA
6bz1_A1e-22161161MEF2 CHIMERA
6bz1_B1e-22161161MEF2 CHIMERA
6bz1_C1e-22161161MEF2 CHIMERA
6bz1_D1e-22161161MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP3475499e-52KP347549.1 Prunus pseudocerasus MADS-box protein MADS1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023923299.11e-35MADS-box transcription factor 17-like
SwissprotP293861e-31AGL6_ARATH; Agamous-like MADS-box protein AGL6
TrEMBLA0A2N9FVP97e-36A0A2N9FVP9_FAGSY; Uncharacterized protein
STRINGEMJ212932e-32(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.15e-34AGAMOUS-like 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Dreni L,Zhang D
    Flower development: the evolutionary history and functions of the AGL6 subfamily MADS-box genes.
    J. Exp. Bot., 2016. 67(6): p. 1625-38
    [PMID:26956504]