PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold03418-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family M-type_MADS
Protein Properties Length: 199aa    MW: 21571.2 Da    PI: 6.626
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold03418-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.41.1e-1419571149
                                                          HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                                                SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                                          + +sk r g++KKA+EL++LC++e a +ifs+ gk + y
  augustus_masked-scaffold03418-abinit-gene-0.0-mRNA-1 19 ILLSKQRSGLFKKASELCTLCAIETAFVIFSPGGKAFSY 57
                                                          669*******************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.554161IPR002100Transcription factor, MADS-box
SMARTSM004328.2E-11160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.98E-16168IPR002100Transcription factor, MADS-box
CDDcd001202.01E-15258No hitNo description
PRINTSPR004042.4E-10323IPR002100Transcription factor, MADS-box
PfamPF003195.9E-151257IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MGHKKTRTKM IQGEDETRIL LSKQRSGLFK KASELCTLCA IETAFVIFSP GGKAFSYGIH  60
SADVAANRLG QPDAYTIQEA EDHHERVLCE LHKNYSDLAS QLDAEKKRGE KLKQIMNETS  120
GCSSWFSTPS SELSYEELLI RQAAMEDLKG KLTKGIEERL AQTSASSAAI NTAGATDPLG  180
TDASGGNSSL DPHGRIVGH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
139KKTRTKM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018829535.16e-65PREDICTED: agamous-like MADS-box protein AGL61
RefseqXP_018835928.16e-65PREDICTED: agamous-like MADS-box protein AGL61
RefseqXP_018854407.16e-65PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2N9J9B02e-73A0A2N9J9B0_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1639169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-28AGAMOUS-like 62