PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold03365-abinit-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ZF-HD
Protein Properties Length: 356aa    MW: 39948.9 Da    PI: 9.6827
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold03365-abinit-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.76.6e-34140196360
                                           ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                                                            +rYkeClkNhAas+Ggh+vDGCgEfmps g+egt +alkCaAC+CHRnFHR+e+e 
  augustus_masked-scaffold03365-abinit-gene-0.4-mRNA-1 140 VIRYKECLKNHAASMGGHVVDGCGEFMPS-GDEGTLEALKCAACECHRNFHRKETEG 195
                                                           689*************************9.999*********************987 PP

                                           ZF-HD_dimer  60 e 60 
                                                           e
  augustus_masked-scaffold03365-abinit-gene-0.4-mRNA-1 196 E 196
                                                           5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.8E-31141193IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-22141196IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.5E-31142192IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.541143192IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.81E-19283353IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-29286354IPR009057Homeodomain-like
TIGRFAMsTIGR015653.9E-28292349IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MELRGQEKEI RMPLPSTLGY NPTHKGSSTK LSSPTVASTV GERRDQTVQG NTIFNPAQTL  60
ELQHHHHLLP QQPNPNSHNN THKPGRDPDA NPDQISAPIA TPSGATTTPI TSASKKSPTP  120
RPQPQPQQNS STIRAAPPKV IRYKECLKNH AASMGGHVVD GCGEFMPSGD EGTLEALKCA  180
ACECHRNFHR KETEGESQYV SDSYYNYNPN TNNDRREIVL PQHHRPPPLT PPPHHHLLHH  240
HHRPHPVPIA PMMMAFGASG GTPAESSSED LGMFRSDHHV GVQGLSQARQ SKKRFRTKFS  300
QEQKDKMMEF AEKLGWKIQK HDEQDVQNFC LEVGIKRQVF KVWMHNNKQA MKKKQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-232933481873ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023886703.10.0zinc-finger homeodomain protein 6-like
TrEMBLA0A2N9EPR91e-145A0A2N9EPR9_FAGSY; Uncharacterized protein
STRINGEOX910761e-98(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.11e-66homeobox protein 24