PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold03279-abinit-gene-0.3-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NF-YC

Protein Properties

Length: 252aa MW: 28333.8 Da PI: 6.3414

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold03279-abinit-gene-0.3-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	179	4.4e-56	74	177	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelf 54 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPv++++ace+f augustus_masked-scaffold03279-abinit-gene-0.3-mRNA-1 74 QLQNFWTNQyqeIEQTSDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMF 130 89****99999**************************************** PP NF-YC 55 ileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101 ileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdivpr++l augustus_masked-scaffold03279-abinit-gene-0.3-mRNA-1 131 ILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDL 177 ******************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	9.05E-34	64	168	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	6.1E-38	87	160	IPR009072	Histone-fold
Pfam	PF00808	1.5E-21	96	159	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MDQLGHGQPA GQVPYGLNPY QSNQMIGASQ PGSVGTMQSP SQTAGLSASS AQLAQHQLAY 60 QHIHHQQQQQ LQQQLQNFWT NQYQEIEQTS DFKNHSLPLA RIKKIMKADE DVRMISAEAP 120 VIFARACEMF ILELTLRSWN HTEENKRRTL QKNDIAAAIT RTDIFDFLVD IVPREDLKDE 180 VLASIPRAGN LPVGGDALPY YYMQPQHSSQ VGAPGMIMGK PVMDQVYGQQ TRPYMTQSAW 240 PHLQHEQPPS DS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-62	82	174	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	152	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269\|PubMed:25105952}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023914824.1	0.0	nuclear transcription factor Y subunit C-9-like
Refseq	XP_023914825.1	0.0	nuclear transcription factor Y subunit C-9-like
Swissprot	Q8L4B2	3e-85	NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBL	A0A2I4GSK3	1e-154	A0A2I4GSK3_JUGRE; nuclear transcription factor Y subunit C-9-like
TrEMBL	A0A2N9HGC4	1e-154	A0A2N9HGC4_FAGSY; Uncharacterized protein
STRING	EOY05563	1e-128	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1257	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.4	9e-83	nuclear factor Y, subunit C9

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Gnesutta N, et al. CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer. Plant Cell, 2017. 29(6): p. 1516-1532 [PMID:28526714] Bi C,Ma Y,Wang XF,Zhang DP Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis. Plant Mol. Biol., 2017. 95(4-5): p. 425-439 [PMID:28924726] Liu X, et al. Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering. Plant Physiol., 2018. 177(1): p. 105-114 [PMID:29599268]