PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold03268-abinit-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family M-type_MADS
Protein Properties Length: 91aa    MW: 10481 Da    PI: 10.2379
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold03268-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF102.81.3e-322474151
                                                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                                                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                                          krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  augustus_masked-scaffold03268-abinit-gene-0.3-mRNA-1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 74
                                                          79***********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.5011676IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-411675IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-311780IPR002100Transcription factor, MADS-box
CDDcd002652.38E-391777No hitNo description
PRINTSPR004048.4E-341838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003191.2E-272572IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-343853IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-345374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048481Biological Processplant ovule development
GO:0090376Biological Processseed trichome differentiation
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MEFPNQALEG SSQRKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSSRGRLY EYSNNRFVTF FTFTSNQSSC S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-201674159Myocyte-specific enhancer factor 2B
1tqe_Q2e-201674159Myocyte-specific enhancer factor 2B
1tqe_R2e-201674159Myocyte-specific enhancer factor 2B
1tqe_S2e-201674159Myocyte-specific enhancer factor 2B
6c9l_A2e-201674159Myocyte-specific enhancer factor 2B
6c9l_B2e-201674159Myocyte-specific enhancer factor 2B
6c9l_C2e-201674159Myocyte-specific enhancer factor 2B
6c9l_D2e-201674159Myocyte-specific enhancer factor 2B
6c9l_E2e-201674159Myocyte-specific enhancer factor 2B
6c9l_F2e-201674159Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023917960.14e-48agamous-like MADS-box protein AGL1
SwissprotQ015403e-39AG_BRANA; Floral homeotic protein AGAMOUS
TrEMBLA0A314U8G69e-47A0A314U8G6_PRUYE; Agamous-like MADS-box protein AGL1
STRINGXP_008229393.12e-44(Prunus mume)
STRINGEMJ184632e-44(Prunus persica)
STRINGXP_007146364.13e-46(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.25e-30MIKC_MADS family protein