PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold02792-abinit-gene-0.6-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 22345.5 Da PI: 4.5684 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.8 | 4.7e-17 | 53 | 101 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+G+r k++g+Wv+eIr+p++ ++r++lg++ ++e+Aa+a++aa+++l+g+ augustus_masked-scaffold02792-abinit-gene-0.6-mRNA-1 53 YRGIR--KRSGKWVSEIREPRK---TTRIWLGTYSSPEMAAAAYDAAALALKGH 101 99**6..678*********843...5*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.54E-18 | 51 | 109 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.29E-15 | 51 | 110 | No hit | No description |
PROSITE profile | PS51032 | 20.073 | 52 | 108 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-26 | 52 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-27 | 52 | 114 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-10 | 53 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MASNYNPSDV PQNPNDTPTP TPTPDADATS PRLAQSPGGS LGQPVLSGRH SMYRGIRKRS 60 GKWVSEIREP RKTTRIWLGT YSSPEMAAAA YDAAALALKG HDTALNFPNS RLTYPIPASA 120 SASDIRAAAA SAAEAARVRT ESESSSGGGA QTNVETASRV EDEFIDEEEL LNMPNLLVDM 180 AEGMLMSPPR IESKSSSDES GGGGDNLWSY T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-13 | 50 | 109 | 12 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023916217.1 | 3e-89 | ethylene-responsive transcription factor ERF025-like | ||||
Swissprot | Q9FJ90 | 6e-50 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A2N9IAB4 | 3e-68 | A0A2N9IAB4_FAGSY; Uncharacterized protein | ||||
STRING | VIT_16s0100g00400.t01 | 6e-64 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF562 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 3e-36 | ERF family protein |
Publications ? help Back to Top | |||
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