PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold02790-abinit-gene-0.8-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 290aa MW: 33425.4 Da PI: 9.0006 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.1 | 8.6e-54 | 8 | 137 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...e 54 +ppGfrFhPtdeel+++yLkkkv+ +k+++ evi+evd++k+ePw+L++++k augustus_masked-scaffold02790-abinit-gene-0.8-mRNA-1 8 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-EVIREVDLNKMEPWELQERCKIgstP 63 69****************************.99**************9644442224 PP NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykg 111 ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + +++g++ktLvfy+g augustus_masked-scaffold02790-abinit-gene-0.8-mRNA-1 64 QNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRN-SYKKIGMRKTLVFYRG 119 55*************************************9.8999************ PP NAM 112 rapkgektdWvmheyrle 129 rap+g+ktdW+mheyrle augustus_masked-scaffold02790-abinit-gene-0.8-mRNA-1 120 RAPHGQKTDWIMHEYRLE 137 ****************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-60 | 6 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.82 | 8 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-28 | 9 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MASSSGGVPP GFRFHPTDEE LLHYYLKKKV SFQKFDMEVI REVDLNKMEP WELQERCKIG 60 STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNSYKKIGM RKTLVFYRGR 120 APHGQKTDWI MHEYRLEDGD DPQENCNEDG WVVCRVFKKK NLFKVGNEGG SIINSDQQLN 180 INTLSTNQPR TFMHRDNQYQ STRQQHNNGN QPSFEPELAL HYTHIPAAAS SQYSLFQTQP 240 LIPSLKPLGG GYDYSTIPSD TPVMDANASS THQINQLSLR GEMDLWGYGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-52 | 8 | 161 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-52 | 8 | 161 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-52 | 8 | 161 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-52 | 8 | 161 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-52 | 8 | 161 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-52 | 8 | 161 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-52 | 8 | 161 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-52 | 8 | 161 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-52 | 8 | 161 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-52 | 8 | 161 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-52 | 8 | 161 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-52 | 8 | 161 | 20 | 170 | NAC domain-containing protein 19 |
4dul_A | 3e-52 | 8 | 161 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-52 | 8 | 161 | 17 | 167 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00431 | DAP | Transfer from AT4G10350 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023885588.1 | 0.0 | protein BEARSKIN2 | ||||
Swissprot | Q9SV87 | 1e-128 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | A0A2I4FTI4 | 1e-160 | A0A2I4FTI4_JUGRE; protein BEARSKIN2 | ||||
STRING | POPTR_0019s09400.1 | 1e-145 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8752 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10350.1 | 1e-130 | NAC domain containing protein 70 |
Publications ? help Back to Top | |||
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