PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold02532-abinit-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 212aa    MW: 23662.1 Da    PI: 6.0747
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold02532-abinit-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54e-1012362348
                                                          -HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                       Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                                                          +W+ Ia++++ gRt++++k++w++yl
  augustus_masked-scaffold02532-abinit-gene-0.4-mRNA-1 12 RWSQIAQHLP-GRTDNEIKNYWHTYL 36
                                                          4*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.502140IPR017930Myb domain
SuperFamilySSF466891.79E-9842IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-141137IPR009057Homeodomain-like
CDDcd001674.22E-81236No hitNo description
PfamPF002493.7E-81236IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MIKVIPFVTL SRWSQIAQHL PGRTDNEIKN YWHTYLKKKV ARAEEMEDHT KTQYTSSSSY  60
TVDSSNSPKN PRTGIPNICN SLEHMEKLPA NAYQSPKEAN CSSLPKLLFA EWLSSDHVQG  120
GSFANSAEGL IARDAFSHNS NFQYTPMQVF SSNEGTYSGE FHNGLSHGSA TTETFNLQYK  180
FEDQISGNGF VDFISGGDAC SDFNMNNGVM YI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023886873.11e-127transcription factor LAF1-like
TrEMBLA0A2N9GT631e-112A0A2N9GT63_FAGSY; Uncharacterized protein
STRINGEOY231736e-60(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.13e-17myb domain protein 18