PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold02443-abinit-gene-0.5-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 250aa MW: 28096.7 Da PI: 8.4606 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.9 | 8.3e-21 | 26 | 64 | 7 | 45 |
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ++rqvtfskRr+g++KKA+EL+vLC+aevav+++ +++k augustus_masked-scaffold02443-abinit-gene-0.5-mRNA-1 26 TKRQVTFSKRRAGLFKKASELCVLCGAEVAVMVITEKDK 64 79*******************************999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.353 | 13 | 72 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.2E-19 | 13 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-8 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-20 | 14 | 104 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-19 | 26 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-8 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-8 | 49 | 70 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MDMVIPKKTK KTQGRQKIEV KQLEGTKRQV TFSKRRAGLF KKASELCVLC GAEVAVMVIT 60 EKDKDKDKEN EKGKGKTYCF GHPDVDTVVN RYLSENNNNN NNNNNDDNSG FGDLLPVDVN 120 EFNRQYAEAE KVLEKEKRHL AEIEQKVKER VGGLWWDEAL DDNMGLEEMH QYKWALQEVR 180 KKVVDRVNEM RMNKSMSKSP VVVPSVDLRL GDVGLGNGFV HPSNLQGGNN GGGGFFHSHG 240 LGFGPFGQGQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023917059.1 | 1e-143 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A2N9J4P1 | 6e-76 | A0A2N9J4P1_FAGSY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-27 | AGAMOUS-like 61 |